View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_low_19 (Length: 363)
Name: NF3226_low_19
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_19 |
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| [»] scaffold0054 (2 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 38237 - 38572
Alignment:
| Q |
13 |
aatattggtctacgcaatcttcacaagcatttgaagaactcactgagatgaattttggtgttggatcccttccgctcatactctttcgtcattatcaaaa |
112 |
Q |
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| T |
38237 |
aatattggtctacgcaatcttcacaagcatttgaagaactcactgagatgaattttggtgttgga--ccttccgctcatactctttcgtcattatcaaaa |
38334 |
T |
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| Q |
113 |
cttccaatacaccccacaaaaccgcacttgacgtccacaacagctttccagaacaacaaaggcactcactgttactcactctaaacaaaccacgaccacc |
212 |
Q |
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| T |
38335 |
cttccaatacaccccacaaaaccgcacttgacgtccacaagagctttccaaaacaacaaaggcactcaccgttactcactctaaacaaaccacgaccacc |
38434 |
T |
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| Q |
213 |
agctcgagaaccatccctattccctactcacgctatctgtattcaacaatctcattcactcgtattccaatctgcaaccgctgaacttcattctctcaaa |
312 |
Q |
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| T |
38435 |
agctcgagaaccatccctattccctactcacgctatctgtattcaacaatctcattcactcgtattccaatctgcaaccgctgaacttcattctctcaaa |
38534 |
T |
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| Q |
313 |
caaaaaggtgaacaacagctatagacatgatgatattg |
350 |
Q |
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| T |
38535 |
caaaaaggtgaacaacagctatagacatgatgatattg |
38572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 350
Target Start/End: Original strand, 42686 - 42720
Alignment:
| Q |
316 |
aaaggtgaacaacagctatagacatgatgatattg |
350 |
Q |
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| T |
42686 |
aaaggtgaacaacagctatatacatgatgatattg |
42720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 32958584 - 32958500
Alignment:
| Q |
251 |
gtattcaacaatctcattcactcgtattccaatctgcaaccgctgaacttcattctctcaaacaaaaaggtgaacaacagctata |
335 |
Q |
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| T |
32958584 |
gtattcaacaatctcattcactcgtattccaatctgcaaccgctgaacttcattctctcaaaagaaaaggcgaacaacaactata |
32958500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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