View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_low_20 (Length: 363)
Name: NF3226_low_20
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 44830289 - 44829956
Alignment:
| Q |
17 |
aggtatgacacagtagaaaacattgataatgttacgtatgatttaataattttcttacatatttgacaacgggatttgagttgtaagagacaaatacaga |
116 |
Q |
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| T |
44830289 |
aggtatgacacggtagaaaacattgataatgttacgtatgatttaataattttcttacatatttgacaacgggatttgagttgtaagagacaaatacaga |
44830190 |
T |
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| Q |
117 |
gtaataagaacaatcttgaggccttaggctcactcagttactcacatgggcctccaaataaaccagttattttaatcaacaaattcaccaatccttttcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44830189 |
gtaataagaacaatcttgaggccttaggctcactgagttactcacatgggcctccaaataaaccagttattttaatcaacaaattcaccaatccttttcc |
44830090 |
T |
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| Q |
217 |
ctataaaaacccctcttattcctctcaaacatcatcactcactcactcatacaccaaatcaaactaaagagtattagcacctcaatcattccaaatggct |
316 |
Q |
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| T |
44830089 |
ctataaagccccctcttattcctctcaaacatcatcactcactcactcatacaccaaatcaaactaaagagtattagcacctcaatcattccaaatggct |
44829990 |
T |
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| Q |
317 |
tccaaggttgctatgctcctttgtctcaacatcc |
350 |
Q |
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| T |
44829989 |
tccaaggttgctatgctcctttgcctcaacatcc |
44829956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 41820138 - 41820345
Alignment:
| Q |
143 |
ggctcactcagttactcacatgggcctccaaataaaccagttattttaatcaacaaattcaccaatccttttccctataaaaacccctcttattcctctc |
242 |
Q |
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| T |
41820138 |
ggctccctcagtaactcacatgggcctccaaataaaccagttattataatcaacaaattcaccaatcc--ttccctataaaatcccctcttatt-ctctc |
41820234 |
T |
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| Q |
243 |
aaacatcatcactcactcactcatacaccaaatcaaactaaagagtattagcacctcaatc---------attccaaatggcttccaaggttgctatgct |
333 |
Q |
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| T |
41820235 |
aaacatcatcactcactcac----acaccaaatcaaact-aagagtattagcaccttaatcttaatcattaatccaaatggcttccaaggttgctatgct |
41820329 |
T |
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| Q |
334 |
cctttgtctcaacatc |
349 |
Q |
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|||||| ||||||||| |
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| T |
41820330 |
cctttgcctcaacatc |
41820345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 41818281 - 41818401
Alignment:
| Q |
17 |
aggtatgacacagtagaaaacattgataatgttacgtat--gatttaataattttcttacatatttgacaacgggatttgagttgtaagagacaaataca |
114 |
Q |
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||||| |||||| ||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41818281 |
aggtaggacacaatagaaaacattgataatgt-acgtatatgatttaat----ttcttacatatttgacaacgggatttgagttgtaatagacaaataca |
41818375 |
T |
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| Q |
115 |
gagtaataagaacaatcttgaggcct |
140 |
Q |
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| T |
41818376 |
gggtaataagaacaatcttgaggcct |
41818401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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