View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_low_21 (Length: 351)
Name: NF3226_low_21
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 31219602 - 31219937
Alignment:
| Q |
1 |
ttacaagtgccttgctttggaacctttattctctcagagatcatactcacaacttgctctttttcaacaactttggtttccctaaggttgacttcagctt |
100 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31219602 |
ttacaagtgccttgcttttgaacctttattctctcagagatcatcctcacaacttgctctttttcaacaaccttggtttccctaaggttgacttcagctt |
31219701 |
T |
|
| Q |
101 |
ccctatactctaaggcttcctcctgtctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaaatac-nnnnnnnctcgtcaaa |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31219702 |
ccctatactctaaggcttcctcctgtctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaaatacatttttttctcgtcaaa |
31219801 |
T |
|
| Q |
200 |
aagtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttcttctcctttcgatcttggaataca |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31219802 |
aagtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttcttctcctttcgatcttggaataca |
31219901 |
T |
|
| Q |
300 |
ccctagaagaacaacgaatcattcatatctactgag |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
31219902 |
ccctagaagaacaacgaatcattcatatctactgag |
31219937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 31213847 - 31214182
Alignment:
| Q |
1 |
ttacaagtgccttgctttggaacctttattctctcagagatcatactcacaacttgctctttttcaacaactttggtttccctaaggttgacttcagctt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31213847 |
ttacaagtgccttgcttttgaacctttattctctcagagatcatcctcacaacttgctctttttcaacaaccttggtttccctaaggttgacttcagctt |
31213946 |
T |
|
| Q |
101 |
ccctatactctaaggcttcctcctgtctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaaatac-nnnnnnnctcgtcaaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
31213947 |
ccctatactctaaggcttcctcctgtctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaaatacatttttttctcgtcaaa |
31214046 |
T |
|
| Q |
200 |
aagtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttcttctcctttcgatcttggaataca |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31214047 |
aagtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttcttctcctttcgatcttggaataca |
31214146 |
T |
|
| Q |
300 |
ccctagaagaacaacgaatcattcatatctactgag |
335 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |
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| T |
31214147 |
cccaagaagaacaacgaatcattcatatctactgag |
31214182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 47895700 - 47895364
Alignment:
| Q |
1 |
ttacaagtgccttgctttggaacctttattctctcagagatcatactcacaacttgctctttttcaacaactttggtttccctaaggttgacttcagctt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
47895700 |
ttacaagtgccttgcttttgaaccttcattctctcagagatcatactcacaacttgctctttttcaacaatcttggtttccctaaggttgacttcagctt |
47895601 |
T |
|
| Q |
101 |
ccctatactctaaggcttcctcctgtctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaaatac--nnnnnnnctcgtcaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47895600 |
tcctatactctaaggcttcctcctgtctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaaatacttttttttcctcgtcaa |
47895501 |
T |
|
| Q |
199 |
aaagtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttcttctcctttcgatcttggaatac |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47895500 |
aaagtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttcttctcctttcgatcttggaatac |
47895401 |
T |
|
| Q |
299 |
accctagaagaacaacgaatcattcatatctactgag |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
47895400 |
accctagaagaacaacgaatcattcatatctactgag |
47895364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 4960014 - 4960170
Alignment:
| Q |
23 |
cctttattctctcagagatcatactcacaacttgctctttttcaacaactttggtttccctaaggttgacttcagcttccctatactctaaggcttcctc |
122 |
Q |
| |
|
|||||||||||||||| || |||||| | ||||||||| || |||| || ||||||||| |||||||||| |||||||||||| ||||||||||| |
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| T |
4960014 |
cctttattctctcagacttcgtactcaaagcttgctcttcttttccaaccttcgtttccctatggttgacttcgatttccctatactccaaggcttcctc |
4960113 |
T |
|
| Q |
123 |
ctgtctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaa |
179 |
Q |
| |
|
|| || ||||||| || | ||||||||||||||||||||||||||||||||||| |
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|
| T |
4960114 |
cttgctgctaaactcctcagctagggatttccgcttttgttccatttcaagctcaaa |
4960170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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