View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3226_low_23 (Length: 334)
Name: NF3226_low_23
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 2601395 - 2601217
Alignment:
| Q |
1 |
tttatattgtattcattcaagttaaatagaatagatttcctgagaacaatataaagattagtaataaatcataaatgacacataaatatacaatgagggg |
100 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || |
|
|
| T |
2601395 |
tttatattgaatgcattcaagttaaatagaatagatttcctgagaacaatataaagattagtaataaatcataattgacacataaatatataa-----gg |
2601301 |
T |
|
| Q |
101 |
tatgattattcattttatcttactagagtcaatatgctagaaacatgacatgacaccaaagcaaagccaatagatgttaattaa |
184 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2601300 |
tacgattattcattttatcttactagagtcaatatgctagaaacatgacatgacaccaaagcaaagccaatagatgttaattaa |
2601217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 2614875 - 2614769
Alignment:
| Q |
1 |
tttatattgtattcattcaagttaaatagaatagatttcctgagaacaatataaagattagtaataaatcataaatgacacataaatatacaatgagggg |
100 |
Q |
| |
|
||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| | |||||| |
|
|
| T |
2614875 |
tttatattgaatgcattcaaggtaaatagaatagatttcttgagaacaatataaagattagtaacaaatcataaatgacacgtaaatatacgacgagggg |
2614776 |
T |
|
| Q |
101 |
tatgatt |
107 |
Q |
| |
|
||||||| |
|
|
| T |
2614775 |
tatgatt |
2614769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 2614748 - 2614680
Alignment:
| Q |
109 |
ttcattttatcttactagagtcaatatgctagaaacatgacatgacaccaaagcaaagccaatagatgttaattaa |
184 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
2614748 |
ttcattttatcttactag--tcaatatggtagaaacatgaca-----ccaaagcaaagccgatagatgttaattaa |
2614680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 22199104 - 22199234
Alignment:
| Q |
1 |
tttatattgtattcattcaagttaaatagaatagatttcctgagaacaatataaagattagtaataaatcataaatgacacataaatatacaatgagggg |
100 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||| |||| | ||||||||| | ||| ||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
22199104 |
tttatattgaatgcattcaaattaaatagaatagttttctttagaacaatacagtgatcagtaataaatcataa-tgacacataaatatacaacgagggg |
22199202 |
T |
|
| Q |
101 |
tatgattattcattttatcttactagagtcaata |
134 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
22199203 |
tatgattattcattt--tcttactagagtcaata |
22199234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University