View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_low_26 (Length: 297)
Name: NF3226_low_26
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 42619227 - 42619340
Alignment:
| Q |
28 |
gtatattttcgtaattttgatacatttagagactataggaacaaactactcgcatattcaagaaccaagatgtcagtctactcactaaatatactatcaa |
127 |
Q |
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| T |
42619227 |
gtatattttcgtaattttgatatattcagagactatatgaacaaactactcgcatattcaaggaccaaaatgacagtctactcacaaaatatactatcaa |
42619326 |
T |
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| Q |
128 |
attagctaaactca |
141 |
Q |
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||||| |||||||| |
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| T |
42619327 |
attagttaaactca |
42619340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 42619406 - 42619454
Alignment:
| Q |
221 |
cttgtaattaaccaaattagctagtaaaacaaagagaattgacaataatgc |
271 |
Q |
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| T |
42619406 |
cttgtaattaaccaaattagctagtaaaac--agagaattgacaataatgc |
42619454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 26446448 - 26446575
Alignment:
| Q |
13 |
aaaatacatatataagtatattttcgtaattttgatacatttagagactataggaacaaactactcgcatattcaagaaccaagatgtcagtctactcac |
112 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||| ||| ||||| ||| | | ||| |||| |
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| T |
26446448 |
aaaatacatatataagtatatttttgtaattttgatacatttagagactattggaacaaacttgtcgcatattgaaggaccaaaatgactggcta-tcac |
26446546 |
T |
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| Q |
113 |
taaatatactatcaaattagctaaactca |
141 |
Q |
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| T |
26446547 |
taaatatactatcaaattagctaaactca |
26446575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 26446654 - 26446704
Alignment:
| Q |
221 |
cttgtaattaaccaaattagctagtaaaacaaagagaattgacaataatgc |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26446654 |
cttgtaattaaccaaattagctagtaaaacaaagagaattgacaataatgc |
26446704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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