View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_low_27 (Length: 289)
Name: NF3226_low_27
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 26031869 - 26031611
Alignment:
| Q |
16 |
caataactaccgacaaatttatccttaagaagacctgaatttcataggcactagttggatgaccttaatgtgagatcaacatgcaatgtagtatatcccg |
115 |
Q |
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| T |
26031869 |
caataattactgacaaatttgtccccaagaagacctgaatttcataggcactaatgggatgacgtcaacgtgggatgaacatgcaatgtagcatatttgg |
26031770 |
T |
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| Q |
116 |
ttaacgtgccacatcatagctccaatagtagaagtcaacggatggaccattttggatgaaattaacaattttaaagatctatttatcaaatcggaaacta |
215 |
Q |
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|||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26031769 |
ttaatgttccacgtcatagctccaatagtagaagtcaacggatggaccattttggatgaaattaacaattttaaagatctatttatcaaatcgg-aacta |
26031671 |
T |
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| Q |
216 |
tttcgacccatgcttgtgagctacctgatctggtattttgctaagtttgttgaagtcatt |
275 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26031670 |
tttcgaccaatgcttgtgagctacctgatctggtattttgctaagtttgttgaagtcatt |
26031611 |
T |
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