View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3226_low_28 (Length: 284)

Name: NF3226_low_28
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3226_low_28
NF3226_low_28
[»] chr5 (7 HSPs)
chr5 (18-275)||(1159135-1159392)
chr5 (18-275)||(10428779-10429036)
chr5 (114-275)||(27409815-27409976)
chr5 (132-275)||(18023244-18023387)
chr5 (132-275)||(19111590-19111733)
chr5 (132-253)||(29300058-29300179)
chr5 (132-275)||(31914497-31914640)
[»] chr1 (11 HSPs)
chr1 (18-275)||(21970692-21970948)
chr1 (21-271)||(12170771-12171021)
chr1 (129-275)||(6493771-6493917)
chr1 (132-275)||(43458543-43458680)
chr1 (134-250)||(9875089-9875206)
chr1 (158-275)||(42750452-42750569)
chr1 (176-275)||(23294835-23294934)
chr1 (203-265)||(7953293-7953355)
chr1 (177-275)||(14882440-14882537)
chr1 (132-275)||(28061945-28062089)
chr1 (135-244)||(10237861-10237970)
[»] chr6 (11 HSPs)
chr6 (19-275)||(14457529-14457785)
chr6 (132-259)||(20987287-20987414)
chr6 (129-275)||(20792840-20792986)
chr6 (179-264)||(8246740-8246826)
chr6 (132-274)||(17776918-17777060)
chr6 (176-259)||(10574425-10574508)
chr6 (24-73)||(20793022-20793071)
chr6 (207-275)||(24568828-24568896)
chr6 (31-61)||(13102189-13102219)
chr6 (192-249)||(11335368-11335425)
chr6 (198-275)||(15841852-15841929)
[»] chr3 (7 HSPs)
chr3 (114-275)||(28518690-28518851)
chr3 (132-271)||(42775370-42775509)
chr3 (176-275)||(20695978-20696077)
chr3 (177-274)||(28570088-28570185)
chr3 (18-73)||(42775256-42775311)
chr3 (228-275)||(49455082-49455129)
chr3 (183-265)||(42449543-42449625)
[»] chr8 (5 HSPs)
chr8 (132-275)||(13960479-13960622)
chr8 (129-275)||(4902124-4902270)
chr8 (194-275)||(29576633-29576714)
chr8 (125-174)||(44682801-44682850)
chr8 (129-275)||(17991932-17992078)
[»] chr4 (9 HSPs)
chr4 (132-275)||(26149641-26149786)
chr4 (129-275)||(43443045-43443191)
chr4 (132-275)||(46661551-46661694)
chr4 (132-275)||(46615606-46615749)
chr4 (198-275)||(29081379-29081456)
chr4 (114-247)||(50435109-50435242)
chr4 (129-275)||(22906287-22906433)
chr4 (129-275)||(22957955-22958101)
chr4 (195-275)||(13852689-13852769)
[»] chr7 (4 HSPs)
chr7 (176-275)||(44162927-44163026)
chr7 (198-275)||(41448443-41448520)
chr7 (125-187)||(6230502-6230564)
chr7 (153-265)||(12828838-12828950)
[»] chr2 (3 HSPs)
chr2 (132-275)||(40919467-40919610)
chr2 (132-275)||(44691384-44691526)
chr2 (198-275)||(33483520-33483598)
[»] scaffold0008 (1 HSPs)
scaffold0008 (195-275)||(57142-57222)


Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 1159392 - 1159135
Alignment:
Q  18 gctttccccacacaaatagtatcatcggcatattgtagatgagaataaaccttcccatcctctttaaatttgaaaccttgaaagagattgaggtgtaccg 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1159392 gctttccccacacaaatagtatcatcgacatattgtagatgagaataaaccttcccatcctctttaaatttgaaaccttgaaagagattgaggcgtaccg 1159293  T
Q  118 cattggacattaagccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1159292 cattggacattaagccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcctc 1159193  T
Q  218 cgttggacttccattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1159192 cgttggacttccattcacaaggatagacatacttcccccacacacacaagccttcatc 1159135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 10429036 - 10428779
Alignment:
Q  18 gctttccccacacaaatagtatcatcggcatattgtagatgagaataaaccttcccatcctctttaaatttgaaaccttgaaagagattgaggtgtaccg 117  Q
    |||||||||| |||||||||||||||||||||||| || ||||| ||  | ||||| ||||| || |  ||||| |||||||| |  |  | | | ||||    
T  10429036 gctttccccatacaaatagtatcatcggcatattggaggtgagagtattctttcccttcctccttcatcttgaacccttgaaacaagtccaagcgaaccg 10428937  T
Q  118 cattggacattaagccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttc 217  Q
    ||||   ||  || |||||||| ||||| || ||||| ||||| || |||||||| |||||||| ||||| || || ||| | ||||||||||| |||||    
T  10428936 cattccgcagcaacccactaaaaccttctgcaaccaagagaaagagaaaaggtgctagaggatcaccttgctttaaacctgtatgaatattaatttcttc 10428837  T
Q  218 cgttggacttccattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    |||||| || ||||||||||| ||||||||| |||||||||| ||||| |||||||||    
T  10428836 cgttgggctcccattcacaagaatagacatagttcccccacaaacacacgccttcatc 10428779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 275
Target Start/End: Original strand, 27409815 - 27409976
Alignment:
Q  114 accgcattggacattaagccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatct 213  Q
    |||||||| | ||| ||||||| ||||||||| ||||| |||||||| | ||||||||||||||| |||||||||||||| || | || || |||||| |    
T  27409815 accgcatttgccatcaagccaccaaagccttccgccactaaaagaaacaagaaaggtgcaagagggtctccttgtttcaatccccgtttaacattaattt 27409914  T
Q  214 cttccgttggacttccattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    | |||||||| || ||||| || || || |||||| |||||||| | |||||||| ||||||    
T  27409915 cctccgttgggctcccattaactagtattgacatatttcccccaaagacacaagctttcatc 27409976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 132 - 275
Target Start/End: Original strand, 18023244 - 18023387
Alignment:
Q  132 ccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccat 231  Q
    |||||||| ||||| ||||| ||||| ||||||||||| || |  ||||||| ||| || || || |||||||||| ||| || ||||||||||| ||||    
T  18023244 ccactaaaaccttccgccactaaaaggaaaaggaaaggggctaatggatctcattgctttaaacccctttgaatatcaatttcctccgttggactcccat 18023343  T
Q  232 tcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    | |||||||||||||| || || ||| | |||||||||||||||    
T  18023344 ttacaaggatagacatcctaccaccaaaaacacaagccttcatc 18023387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 132 - 275
Target Start/End: Original strand, 19111590 - 19111733
Alignment:
Q  132 ccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccat 231  Q
    |||||||| |||||||||||||||||||| | ||| || || |  || ||||||||||| |  |||||||||||||| || || |||||||| || ||||    
T  19111590 ccactaaaaccttcggccaccaaaagaaataagaatggagctaatgggtctccttgtttaagacctctttgaatatttatttcctccgttgggctaccat 19111689  T
Q  232 tcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    | || ||||||||||| ||||| ||||| |||||||| ||||||    
T  19111690 ttactaggatagacatgcttccaccacaaacacaagcattcatc 19111733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 132 - 253
Target Start/End: Complemental strand, 29300179 - 29300058
Alignment:
Q  132 ccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccat 231  Q
    |||||||| |||||||||||||| | |||||||||||| |||||  |||| |||||||| || ||||||| |||||| || || || ||||| || ||||    
T  29300179 ccactaaaaccttcggccaccaacaaaaaaaggaaaggagcaagcagatccccttgttttaaacctctttcaatattgatttcctctgttgggctcccat 29300080  T
Q  232 tcacaaggatagacatacttcc 253  Q
    | ||||| || || ||||||||    
T  29300079 taacaagcattgatatacttcc 29300058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 275
Target Start/End: Complemental strand, 31914640 - 31914497
Alignment:
Q  132 ccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccat 231  Q
    |||||||| || || ||||||||||| || |  || ||||  ||| |||| ||||| || | ||| ||||||||||||||||||| ||| |||||||| |    
T  31914640 ccactaaacccctcagccaccaaaaggaacaaaaatggtgttagacgatccccttgctttagccccctttgaatattaatctctttcgtaggacttccgt 31914541  T
Q  232 tcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    | ||||| || |||||||| || ||| |   |||||||||||||    
T  31914540 tgacaagaatggacatactacctccaaaagtacaagccttcatc 31914497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 21970948 - 21970692
Alignment:
Q  18 gctttccccacacaaatagtatcatcggcatattgtagatgagaataaaccttcccatcctctttaaatttgaaaccttgaaagagattgaggtgtaccg 117  Q
    |||||||||| ||| |||||||||||||||||||| || |||||||| ||| |||| ||||||||||  ||||  |||||||||| ||| ||  | ||||    
T  21970948 gctttccccagacatatagtatcatcggcatattgaaggtgagaatagaccgtcccctcctctttaatcttgacgccttgaaagaaattaagacgcaccg 21970849  T
Q  118 cattggacattaagccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttc 217  Q
    ||||||||||||| |||||||| |||||  |||| || || ||||| ||||||||||||||||||||||||||||| |||||||| ||||| || || ||    
T  21970848 cattggacattaaaccactaaaaccttccaccactaataggaaaag-aaaggtgcaagaggatctccttgtttcaatcctctttggatattgatttcctc 21970750  T
Q  218 cgttggacttccattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    ||||||||| ||||| || ||||| |||||||| || |||||||||||||||||||||    
T  21970749 cgttggactaccatttactaggatggacatactcccgccacacacacaagccttcatc 21970692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 271
Target Start/End: Complemental strand, 12171021 - 12170771
Alignment:
Q  21 ttccccacacaaatagtatcatcggcatattgtagatgagaataaaccttcccatcctctttaaatttgaaaccttgaaagagattgaggtgtaccgcat 120  Q
    ||||||| |||||| ||||||||||||||||| |||||||| ||  |||||||||| || || |  |||||||||||||| | |||   |   |  ||||    
T  12171021 ttccccatacaaatcgtatcatcggcatattggagatgagagtactccttcccatcttccttcatcttgaaaccttgaaaaaaattaccgcagatagcat 12170922  T
Q  121 tggacattaagccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgt 220  Q
    |   |||||| || ||||| ||||| |||||||||||||| ||||| || || | |||||||||||| || |  ||||| ||||||||||| ||||| ||    
T  12170921 tcctcattaaaccgctaaaaccttccgccaccaaaagaaagaggaatggagctaaaggatctccttgcttaaggcctctatgaatattaatttcttctgt 12170822  T
Q  221 tggacttccattcacaaggatagacatacttcccccacacacacaagcctt 271  Q
    ||| || || || ||||| || |||||||| || ||||||||||| |||||    
T  12170821 tgggctcccgttaacaagaatcgacatactccctccacacacacacgcctt 12170771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 129 - 275
Target Start/End: Complemental strand, 6493917 - 6493771
Alignment:
Q  129 aagccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttc 228  Q
    ||||||||||| ||||| |||||||| | ||| |||||||| || |  ||||| |||||||| || ||||| ||||||| ||||||  ||||||| |  |    
T  6493917 aagccactaaaaccttccgccaccaacaaaaataggaaaggagctaacggatccccttgttttaaacctctatgaatatcaatctccgccgttgggcaac 6493818  T
Q  229 cattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    |||||||||| |  |||||||| || |||||||||||||| ||||||    
T  6493817 cattcacaagtaccgacatactaccaccacacacacaagctttcatc 6493771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 275
Target Start/End: Complemental strand, 43458680 - 43458543
Alignment:
Q  132 ccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccat 231  Q
    |||||||| || || |||||||||| ||| ||||||||||| | |||||| |||||||| |||||||||||||||| ||| |||||     || | ||||    
T  43458680 ccactaaaaccctctgccaccaaaataaataggaaaggtgccaaaggatccccttgttttaaccctctttgaatatcaatttcttc-----ga-taccat 43458587  T
Q  232 tcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    ||||||| |  |||||||| || ||||||||||| |||||||||    
T  43458586 tcacaagaaccgacatactcccaccacacacacatgccttcatc 43458543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 9875089 - 9875206
Alignment:
Q  134 actaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttg-tttcaaccctctttgaatattaatctcttccgttggacttccatt 232  Q
    ||||||| |||||||||||||||| ||||||||| | |  | |||||| ||||| ||| || ||| ||||||| ||||||||||  || |||||||||||    
T  9875089 actaaagtcttcggccaccaaaaggaaaaggaaatgcgacaaaggatccccttgctttaaaacctttttgaatgttaatctcttatgtaggacttccatt 9875188  T
Q  233 cacaaggatagacatact 250  Q
    |||||| || ||||||||    
T  9875189 cacaagaattgacatact 9875206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 275
Target Start/End: Original strand, 42750452 - 42750569
Alignment:
Q  158 aaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccattcacaaggatagacatacttccccca 257  Q
    |||||| |||||||| | ||||||||||||||| |  |||||||||||||| ||||| ||| ||||  ||||||| ||||| || |||||   |||||||    
T  42750452 aaaaagaaaaggtgctaaaggatctccttgtttaaggcctctttgaatatttatctcctccattggggttccattaacaagtatcgacatggatccccca 42750551  T
Q  258 cacacacaagccttcatc 275  Q
    |||||||| || ||||||    
T  42750552 cacacacacgctttcatc 42750569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 275
Target Start/End: Original strand, 23294835 - 23294934
Alignment:
Q  176 aggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    |||||| ||||||||||| ||  |||||||||| || ||||| ||| | || ||||| ||||||||||||||||| ||  || ||||||||| |||||||    
T  23294835 aggatccccttgtttcaatcccttttgaatattgatttcttctgttaggctcccattaacaaggatagacatactcccttcaaacacacaagacttcatc 23294934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 7953355 - 7953293
Alignment:
Q  203 aatattaatctcttccgttggacttccattcacaaggatagacatacttcccccacacacaca 265  Q
    ||||||||| || ||||| ||||||||||||||||| ||||||||||| || ||||| |||||    
T  7953355 aatattaatttcctccgtaggacttccattcacaagaatagacatactacctccacaaacaca 7953293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 275
Target Start/End: Complemental strand, 14882537 - 14882440
Alignment:
Q  177 ggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    ||||| ||||||||  ||||||||||||| |||||| |||||| |||||| ||||| ||||  ||| |||  ||||||| ||| |||||||||||||||    
T  14882537 ggatccccttgttttgaccctctttgaatgttaatc-cttccgctggactaccattaacaataataaacacgcttccccaacatacacaagccttcatc 14882440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 275
Target Start/End: Original strand, 28061945 - 28062089
Alignment:
Q  132 ccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccat 231  Q
    |||||||  ||||| ||||| | |||||| |  |||||||| |  ||||||||||||||||| || ||||| | | ||||||| ||||| |||   ||||    
T  28061945 ccactaattccttccgccacaagaagaaacaaaaaaggtgctaacggatctccttgtttcaaacccctttggacactaatctcctccgtgggagacccat 28062044  T
Q  232 tcacaaggatagacatacttcccccacacacac-aagccttcatc 275  Q
    | || ||||| |||||| |||||||| |||||| |||||||||||    
T  28062045 taactaggatcgacatatttcccccaaacacacaaagccttcatc 28062089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 10237970 - 10237861
Alignment:
Q  135 ctaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccattca 234  Q
    ||||| ||||| || |||||||| || |  || |||||||| ||||| ||||| || | ||| |||||||||||||| || ||| ||||||| ||||| |    
T  10237970 ctaaaaccttccgctaccaaaaggaacaaaaatggtgcaagcggatcaccttgcttaagccccctttgaatattaatttcctccattggactaccattga 10237871  T
Q  235 caaggataga 244  Q
    | ||||||||    
T  10237870 cgaggataga 10237861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 14457785 - 14457529
Alignment:
Q  19 ctttccccacacaaatagtatcatcggcatattgtagatgagaataaaccttcccatcctctttaaatttgaaaccttgaaagagattgaggtgtaccgc 118  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||| | ||   ||||||||| ||| | ||| |   | |||||    
T  14457785 ctttccccacgcaaatagtatcatcggcatattgaagatgagaatataccttaccatcctcctaaaccatgaaaccttcaaacaaattcaaccggaccgc 14457686  T
Q  119 attggacattaagccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttcc 218  Q
    |||   |||||| |||||||| || || ||||||||||| ||||| |||||||| || | ||| |||||||| || ||||| | |||||| |||||||||    
T  14457685 attcctcattaaaccactaaatccctccgccaccaaaaggaaaagaaaaggtgctagggaatcaccttgttttaaacctctataaatatttatctcttcc 14457586  T
Q  219 gttggacttccattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
     | || |||||||| || || ||||||||||||||||||||||||||||||||||||    
T  14457585 ttagggcttccattaacgagaatagacatacttcccccacacacacaagccttcatc 14457529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 20987414 - 20987287
Alignment:
Q  132 ccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccat 231  Q
    |||||||| || || |||||||||||||||||||||||||| | | |||| |||||||| |||||||||||||||| ||| ||||| |||||||  ||||    
T  20987414 ccactaaaaccctccgccaccaaaagaaaaaggaaaggtgccaaaagatccccttgttttaaccctctttgaatatcaatttcttcggttggacaaccat 20987315  T
Q  232 tcacaaggatagacatacttcccccaca 259  Q
    ||||||| || |||||||| || |||||    
T  20987314 tcacaagtatcgacatactcccaccaca 20987287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 275
Target Start/End: Complemental strand, 20792986 - 20792840
Alignment:
Q  129 aagccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttc 228  Q
    ||||||||||| || || |||||||||||||| || |||||||| |  ||||| |||||||| || ||||||||||||||||| |||||||||||||| |    
T  20792986 aagccactaaaaccctccgccaccaaaagaaagagaaaaggtgctaagggatcaccttgttttaatcctctttgaatattaatttcttccgttggactac 20792887  T
Q  229 cattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    |||| || |  || |||||||| || ||||| ||||| || ||||||    
T  20792886 cattaaccaaaatggacatactaccaccacatacacacgctttcatc 20792840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 8246740 - 8246826
Alignment:
Q  179 atctccttgtttcaaccctctttgaatattaatctcttccgttggacttccattcacaaggatagacatacttcccc-cacacacac 264  Q
    |||||||||||| |  |||||||||||||||||||| |||||||| ||||||||  ||||||| ||||||||||||| |||||||||    
T  8246740 atctccttgtttaaggcctctttgaatattaatctcctccgttgggcttccattagcaaggatcgacatacttccccacacacacac 8246826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 274
Target Start/End: Complemental strand, 17777060 - 17776918
Alignment:
Q  132 ccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccat 231  Q
    |||||||| ||||  || ||||||||||||||||| ||||| |  ||||||||||| || || || ||||  ||||  || ||||| ||||| || ||||    
T  17777060 ccactaaaacctttcgctaccaaaagaaaaaggaagggtgccaatggatctccttgctttaaaccccttttgatatctatttcttcggttgggctaccat 17776961  T
Q  232 tcacaaggatagacatacttcccccacacacacaagccttcat 274  Q
    | ||||||||||||||||| |||| | ||||||| ||||||||    
T  17776960 taacaaggatagacatactacccctaaacacacacgccttcat 17776918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 10574425 - 10574508
Alignment:
Q  176 aggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccattcacaaggatagacatacttcccccaca 259  Q
    ||||||||||||||| |  ||||| |||||| ||||||| || || ||||||||||| ||||| || ||||||||||| |||||    
T  10574425 aggatctccttgtttaaggcctctatgaatactaatctcctcggtaggacttccattaacaagaatcgacatacttccaccaca 10574508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 20793071 - 20793022
Alignment:
Q  24 cccacacaaatagtatcatcggcatattgtagatgagaataaaccttccc 73  Q
    ||||||||||||||||||||||||||||| ||||| || || ||||||||    
T  20793071 cccacacaaatagtatcatcggcatattgaagatgcgagtacaccttccc 20793022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 24568896 - 24568828
Alignment:
Q  207 ttaatctcttccgttggacttccattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    ||||| || ||||||||||||||||| || | |||| |||||||||| |||| ||||||| ||||||||    
T  24568896 ttaatttcctccgttggacttccattaactatgatatacatacttcctccacgcacacaaaccttcatc 24568828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Complemental strand, 13102219 - 13102189
Alignment:
Q  31 aaatagtatcatcggcatattgtagatgaga 61  Q
    |||||||||||||||||||||||||||||||    
T  13102219 aaatagtatcatcggcatattgtagatgaga 13102189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 11335368 - 11335425
Alignment:
Q  192 aaccctctttgaatattaatctcttccgttggacttccattcacaaggatagacatac 249  Q
    ||||||||||| ||||| | ||||||||| ||||| ||||||||||| || |||||||    
T  11335368 aaccctctttggatattgacctcttccgtcggactcccattcacaagaatcgacatac 11335425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 15841929 - 15841852
Alignment:
Q  198 ctttgaatattaatctcttccgttggacttccattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    ||||||||||| ||||| ||||||||||| |||||||| || ||||| ||||| || ||| | |||||  ||||||||    
T  15841929 ctttgaatattgatctcctccgttggactcccattcactagaatagatatactcccaccaaaaacacatcccttcatc 15841852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 114 - 275
Target Start/End: Original strand, 28518690 - 28518851
Alignment:
Q  114 accgcattggacattaagccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatct 213  Q
    |||||||| ||||| ||||||||||| ||||| ||||| | ||| || | |||||| ||||| ||||| ||||||||||| || | ||||| |||||| |    
T  28518690 accgcattcgacatcaagccactaaaaccttctgccactagaaggaacaagaaaggagcaagcggatcaccttgtttcaaaccccgttgaacattaattt 28518789  T
Q  214 cttccgttggacttccattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    |||  ||||||| |||||| ||||| || ||||||||||||||| ||||||||| |||||||    
T  28518790 ctttggttggacatccatttacaagcatcgacatacttcccccaaacacacaagtcttcatc 28518851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 132 - 271
Target Start/End: Original strand, 42775370 - 42775509
Alignment:
Q  132 ccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccat 231  Q
    ||||||||||| ||  ||||||| || ||||| |||||||| |  || || || |||||||| ||||| ||||||||||| |||||||||||||||||||    
T  42775370 ccactaaagccctccaccaccaataggaaaagaaaaggtgctaaggggtcgccctgtttcaatcctctatgaatattaatttcttccgttggacttccat 42775469  T
Q  232 tcacaaggatagacatacttcccccacacacacaagcctt 271  Q
    | || |  |||||||| ||||||||||||||||| |||||    
T  42775470 taaccaaaatagacatccttcccccacacacacacgcctt 42775509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 275
Target Start/End: Complemental strand, 20696077 - 20695978
Alignment:
Q  176 aggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    |||||| |||||||| |  ||||||||||||  |||||| |||||||| |||||||| ||||| ||||||||||| || ||| ||||||||| |||||||    
T  20696077 aggatcaccttgtttaaggcctctttgaatacaaatctcctccgttgggcttccattaacaagaatagacatactccctccaaacacacaagtcttcatc 20695978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 274
Target Start/End: Complemental strand, 28570185 - 28570088
Alignment:
Q  177 ggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccattcacaaggatagacatacttcccccacacacacaagccttcat 274  Q
    |||||||||||||| |  ||||||| |||||||||||| |  || || || ||||| |||||||| |||||||||||||| ||||||||  |||||||    
T  28570185 ggatctccttgtttaaggcctcttttaatattaatctcctttgtagggctaccattgacaaggatcgacatacttcccccccacacacacaccttcat 28570088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 42775256 - 42775311
Alignment:
Q  18 gctttccccacacaaatagtatcatcggcatattgtagatgagaataaaccttccc 73  Q
    |||||||||||||||||||||||||||||||| || ||||| || || ||||||||    
T  42775256 gctttccccacacaaatagtatcatcggcataatgaagatgggagtagaccttccc 42775311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 49455129 - 49455082
Alignment:
Q  228 ccattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    ||||| ||||| |||||||||||||| ||||||||| |||||||||||    
T  49455129 ccattaacaagaatagacatacttcctccacacacataagccttcatc 49455082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 42449543 - 42449625
Alignment:
Q  183 ccttgtttcaaccctctttgaatattaatctcttccgttggacttccattcacaaggatagacatacttcccccacacacaca 265  Q
    ||||| ||||| |||||||| || |||||||||||||||||||||| ||| || |   | |||||||| || |||||||||||    
T  42449543 ccttgcttcaatcctctttgtatgttaatctcttccgttggacttcaatttaccaaactcgacatactaccaccacacacaca 42449625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 132 - 275
Target Start/End: Original strand, 13960479 - 13960622
Alignment:
Q  132 ccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccat 231  Q
    |||||||| ||||| || ||||||||||| || || || || | |||||| |||||||| |  ||||| | ||| ||||| |||||||| ||||||||||    
T  13960479 ccactaaaaccttcagcaaccaaaagaaagagaaagggagctaaaggatcaccttgtttaaggcctctataaatgttaatttcttccgtaggacttccat 13960578  T
Q  232 tcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    ||||||| || ||||| || ||||||||||||||||||||||||    
T  13960579 tcacaagaatcgacatgctccccccacacacacaagccttcatc 13960622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 275
Target Start/End: Complemental strand, 4902270 - 4902124
Alignment:
Q  129 aagccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttc 228  Q
    ||||||| ||| |||||||| |||||||| || |  ||||| || |  ||||| ||||| || |  |||||||| ||||||||||||||||| || || |    
T  4902270 aagccaccaaatccttcggctaccaaaaggaataaaaaaggagctaacggatcaccttgcttaagacctctttggatattaatctcttccgtcgggctac 4902171  T
Q  229 cattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    |||| ||||| ||||||||||| |||||||| ||||||  |||||||    
T  4902170 cattgacaagaatagacatactccccccacaaacacaactcttcatc 4902124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 275
Target Start/End: Original strand, 29576633 - 29576714
Alignment:
Q  194 ccctctttgaatattaatctcttccgttggacttccattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    |||| ||||||||||||| || || |||   |||||||||||||||||||||||||| |||||| |||||||| ||||||||    
T  29576633 ccctttttgaatattaatttcctctgttaagcttccattcacaaggatagacatactccccccaaacacacaacccttcatc 29576714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 44682850 - 44682801
Alignment:
Q  125 cattaagccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaa 174  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  44682850 cattaagccactaaaaccttccgccaccaaaagaaataggaaaggtgcaa 44682801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 275
Target Start/End: Original strand, 17991932 - 17992078
Alignment:
Q  129 aagccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttc 228  Q
    ||||| ||||| ||||| ||| |||| ||||| |  ||||| ||||| ||||| |||||||| |  ||||  |||||   |||||| ||||||||||| |    
T  17991932 aagccgctaaatccttccgccgccaagagaaacaaaaaaggggcaaggggatccccttgtttaaggcctcgatgaatgcaaatctcctccgttggactac 17992031  T
Q  229 cattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    |||||||||| || |||||||| || | | | |||||||| ||||||    
T  17992032 cattcacaagaatggacatactcccacaaaaaacacaagctttcatc 17992078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 275
Target Start/End: Complemental strand, 26149786 - 26149641
Alignment:
Q  132 ccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggact-tcca 230  Q
    |||||||| ||||| |||||||||||||| || |||||||| | | |||| |||||||| |  ||||||||||| || ||  |||||||||||||  |||    
T  26149786 ccactaaaaccttccgccaccaaaagaaagagaaaaggtgctaaatgatcaccttgtttaagacctctttgaatgttgattgcttccgttggactcccca 26149687  T
Q  231 ttcacaaggatagacatacttcccccac-acacacaagccttcatc 275  Q
    |||||||| || ||||||||||| |||| ||||||||| |||||||    
T  26149686 ttcacaagaatcgacatacttccaccacaacacacaagtcttcatc 26149641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 129 - 275
Target Start/End: Original strand, 43443045 - 43443191
Alignment:
Q  129 aagccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttc 228  Q
    ||||||| ||| ||||| ||||| | |||||| | |||| |||||||||| |||||||||||||| || |||| || |||||| || |||||||| || |    
T  43443045 aagccaccaaaaccttccgccactagaagaaacaagaaaagtgcaagagggtctccttgtttcaatccccttttaacattaatttcctccgttgggctcc 43443144  T
Q  229 cattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    |||| || | ||| |||||| |||| ||| |||||||||| ||||||    
T  43443145 cattaactaagattgacatatttccgccaaacacacaagctttcatc 43443191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 275
Target Start/End: Complemental strand, 46661694 - 46661551
Alignment:
Q  132 ccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccat 231  Q
    |||||||| ||||| ||||| |||||||||||||||||  | | |||| | |||||||| |  ||||| ||||| || || ||||||||||| ||||| |    
T  46661694 ccactaaaaccttccgccactaaaagaaaaaggaaaggcactaaaggaccaccttgtttaagacctctatgaatgttgatttcttccgttgggcttccgt 46661595  T
Q  232 tcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    | ||||| ||  ||||||  || |||||||||||||||||||||    
T  46661594 ttacaagaatcaacataccaccaccacacacacaagccttcatc 46661551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 275
Target Start/End: Original strand, 46615606 - 46615749
Alignment:
Q  132 ccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccat 231  Q
    |||||||| ||||| ||||| ||||||||||||||||   | | |||||| |||||||| |  ||||| ||||| || || ||||||||||| ||||| |    
T  46615606 ccactaaaaccttccgccactaaaagaaaaaggaaagacactaaaggatcaccttgtttaagacctctatgaatgttgatttcttccgttgggcttccgt 46615705  T
Q  232 tcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    | |  || || |||||||  || |||||||||||||||||||||    
T  46615706 ttaagagaatcgacataccaccaccacacacacaagccttcatc 46615749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 29081456 - 29081379
Alignment:
Q  198 ctttgaatattaatctcttccgttggacttccattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    |||| |||||||||||| ||||| ||||| ||||| ||||| || |||||||| ||||||||||||||  ||||||||    
T  29081456 cttttaatattaatctcctccgtcggactaccattaacaagaattgacatactccccccacacacacaccccttcatc 29081379  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 50435242 - 50435109
Alignment:
Q  114 accgcattggacattaagccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatct 213  Q
    |||||||| ||||| || |||||||| ||||||||||||||||| || |  ||||||||||| ||||| ||||| || |  |||||||| | |  |||||    
T  50435242 accgcatttgacatcaaaccactaaaaccttcggccaccaaaaggaacaaaaaaggtgcaagcggatccccttgctttaggcctctttggacacaaatct 50435143  T
Q  214 cttccgttggacttccattcacaaggatagacat 247  Q
    | || ||||| || ||||| ||||| ||||||||    
T  50435142 cctcggttgggctcccattaacaagaatagacat 50435109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 275
Target Start/End: Original strand, 22906287 - 22906433
Alignment:
Q  129 aagccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttc 228  Q
    ||||||| ||| ||||| ||||| | |||||| | ||||||||||||||| |||||||| ||||| || |||| || |||||| |  || ||||| || |    
T  22906287 aagccaccaaaaccttccgccactagaagaaacaagaaaggtgcaagagggtctccttgattcaatccccttttaacattaattttctctgttgggctcc 22906386  T
Q  229 cattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    | || || | ||| |||||| |||| ||| |||||||||| ||||||    
T  22906387 cgttaactaagattgacatatttccaccaaacacacaagctttcatc 22906433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 275
Target Start/End: Original strand, 22957955 - 22958101
Alignment:
Q  129 aagccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttc 228  Q
    ||||||| ||| ||||| ||||| | |||||| | ||||||||||||||| |||||||| ||||| || |||| || |||||| |  || ||||| || |    
T  22957955 aagccaccaaaaccttccgccactagaagaaacaagaaaggtgcaagagggtctccttgattcaatccccttttaacattaattttctctgttgggctcc 22958054  T
Q  229 cattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    | || || | ||| |||||| |||| ||| |||||||||| ||||||    
T  22958055 cgttaactaagattgacatatttccaccaaacacacaagctttcatc 22958101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 275
Target Start/End: Complemental strand, 13852769 - 13852689
Alignment:
Q  195 cctctttgaatattaatctcttccgttggacttccattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    ||||| |||||||||||||| | ||| ||||||||||| || || ||||||||| | || ||| | ||||| |||||||||    
T  13852769 cctctatgaatattaatctccttcgtcggacttccattaactagaatagacatagtcccaccaaatacacacgccttcatc 13852689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 275
Target Start/End: Complemental strand, 44163026 - 44162927
Alignment:
Q  176 aggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    |||||| |||||||| |  || ||||| ||||||||||| ||| ||||||||||||||||||| ||||||||||| || |||||||| ||||| ||||||    
T  44163026 aggatccccttgtttaaggcccctttggatattaatctcctccattggacttccattcacaagaatagacatactccctccacacacgcaagctttcatc 44162927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 41448520 - 41448443
Alignment:
Q  198 ctttgaatattaatctcttccgttggacttccattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    |||||||||||||| || ||||| || |||||||| ||||| || |||||||| |||||||||||||||| |||||||    
T  41448520 ctttgaatattaatttcctccgtagggcttccattaacaagaatggacatactccccccacacacacaagtcttcatc 41448443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 6230564 - 6230502
Alignment:
Q  125 cattaagccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttg 187  Q
    |||||| |||||||||||||| |||||||||||||| || ||||| || | ||||||||||||    
T  6230564 cattaaaccactaaagccttccgccaccaaaagaaatagaaaaggcgccaaaggatctccttg 6230502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 265
Target Start/End: Original strand, 12828838 - 12828950
Alignment:
Q  153 aaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccattcacaaggatagacatacttc 252  Q
    |||| |||||||||||| || |  ||||||||||| || |  ||||| ||||| ||||| |||| ||||||  ||||||| ||||| || |||||||| |    
T  12828838 aaaaaaaaaaggaaaggggccaatggatctccttgcttgaggcctctatgaatgttaatttctttcgttgggattccattaacaagaatcgacatactac 12828937  T
Q  253 ccccacacacaca 265  Q
    || |||| |||||    
T  12828938 cctcacaaacaca 12828950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 275
Target Start/End: Complemental strand, 40919610 - 40919467
Alignment:
Q  132 ccactaaagccttcggccaccaaaagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttccat 231  Q
    ||||||||||| ||||||||||| | ||| | ||| || || | |||||| |||||||| | |||||||||||| |  || | |||||| |  || || |    
T  40919610 ccactaaagccctcggccaccaataaaaacaagaacggagccaaaggatccccttgtttaagccctctttgaatgtcgatttgttccgtcgagctaccgt 40919511  T
Q  232 tcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    | |||||||| ||||| |||||| ||||||||||||||||||||    
T  40919510 taacaaggatcgacatgcttcccgcacacacacaagccttcatc 40919467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 275
Target Start/End: Complemental strand, 44691526 - 44691384
Alignment:
Q  132 ccactaaagccttcggccaccaa-aagaaaaaggaaaggtgcaagaggatctccttgtttcaaccctctttgaatattaatctcttccgttggacttcca 230  Q
    |||||||| |||||||||||||| ||||| ||  ||||| || | |||||| |||||||| |  | ||||||||| |  ||||| ||||||||||| |||    
T  44691526 ccactaaaaccttcggccaccaacaagaataa--aaaggagctaaaggatcaccttgttttaggcatctttgaatgtgtatctcctccgttggactacca 44691429  T
Q  231 ttcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    || ||||| |  |||||||| || ||||||||||| |||||||||    
T  44691428 ttgacaagcacggacatactccctccacacacacacgccttcatc 44691384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 33483598 - 33483520
Alignment:
Q  198 ctttgaatattaatctcttccgttggacttccattcacaaggatagacatacttccccc-acacacacaagccttcatc 275  Q
    |||||||||||||| || ||| | ||||| ||||| | |||||| |||||||| ||||| |||||||||||||||||||    
T  33483598 ctttgaatattaatttcctccataggactcccattaataaggattgacatactcccccccacacacacaagccttcatc 33483520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 275
Target Start/End: Complemental strand, 57222 - 57142
Alignment:
Q  195 cctctttgaatattaatctcttccgttggacttccattcacaaggatagacatacttcccccacacacacaagccttcatc 275  Q
    |||| ||| ||| ||||||| || ||||| ||||| |||||||| |||||||||||||| ||| || |||| | |||||||    
T  57222 cctcgttggatactaatctcctctgttgggcttccgttcacaagaatagacatacttccaccaaacgcacacgtcttcatc 57142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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