View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3226_low_29 (Length: 276)

Name: NF3226_low_29
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3226_low_29
NF3226_low_29
[»] chr5 (7 HSPs)
chr5 (18-266)||(5663607-5663855)
chr5 (43-239)||(5664702-5664895)
chr5 (191-266)||(5046440-5046515)
chr5 (191-266)||(5047211-5047286)
chr5 (191-266)||(5047982-5048057)
chr5 (91-144)||(5046572-5046625)
chr5 (91-144)||(5047343-5047396)
[»] chr4 (7 HSPs)
chr4 (43-266)||(24853338-24853562)
chr4 (49-144)||(24856353-24856448)
chr4 (191-266)||(28787952-28788027)
chr4 (191-266)||(51246614-51246689)
chr4 (191-266)||(17525522-17525597)
chr4 (48-248)||(28787018-28787223)
chr4 (94-144)||(51246738-51246788)
[»] scaffold0406 (1 HSPs)
scaffold0406 (80-266)||(6272-6460)
[»] chr7 (1 HSPs)
chr7 (191-266)||(22622406-22622481)
[»] chr1 (3 HSPs)
chr1 (200-239)||(29371922-29371961)
chr1 (41-145)||(22056427-22056530)
chr1 (213-266)||(22055518-22055571)
[»] chr3 (2 HSPs)
chr3 (191-266)||(12739334-12739409)
chr3 (191-248)||(12738201-12738258)
[»] chr8 (1 HSPs)
chr8 (180-250)||(1275221-1275291)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 5663607 - 5663855
Alignment:
Q  18 cacccttcataacttatgagtatattgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaa 117  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  5663607 cacccttcataacttacgagtatattgttagaaaatatatattgtgggtgctagtggtacaatggttagtagcattggacaagaagacacacattgataa 5663706  T
Q  118 atagctcattgtagaaggagagaatatagtatatggaagcccttaatatattgtaattgtatttaaatgtttaaatacaatcgcacccatataattctat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5663707 atagctcattgtagaaggagagaatatagtatatggaagcccttaatatattgtaattgtatttaaatgtttaaatacaatcgcacccatataattctat 5663806  T
Q  218 ttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 266  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5663807 ttataagtgattgaagatgtttctaaaactagaagagtctaggcctttg 5663855  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 5664702 - 5664895
Alignment:
Q  43 tgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaat 142  Q
    |||||||||||||||| ||||| ||| ||| ||| | ||||   | ||||||||||||||| ||||||||||||| ||  | ||||||| ||||||||||    
T  5664702 tgttagaaaatatatagtgtggaagcaagttgtagagtggtatgtggcattggacaagaaggcacacattggtaattaatttattgtaggaggagagaat 5664801  T
Q  143 atagtatatggaagcccttaata-tattgtaattgtatttaaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgttt 239  Q
    ||  || | ||||||||| |||| |||||| |||||||||||| | || |||||||| |||||||||||| ||    |||| ||||||||||||||||    
T  5664802 atgatacagggaagccctcaatattattgtcattgtatttaaaagcttgaatacaattgcacccatataagtc----tataggtgcttgaagatgttt 5664895  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 5046515 - 5046440
Alignment:
Q  191 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 266  Q
    |||||||| |||| ||||||| |||||||||| ||||||| |||||||||||||||||||| | ||||||||||||    
T  5046515 aatacaattgcactcatataagtctatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttg 5046440  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 5047286 - 5047211
Alignment:
Q  191 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 266  Q
    |||||||| |||| ||||||| | |||||||| ||||||| |||||||||||||||||||| | ||||||||||||    
T  5047286 aatacaattgcactcatataagtatatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttg 5047211  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 5048057 - 5047982
Alignment:
Q  191 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 266  Q
    |||||||| |||| ||||||| | |||||||| ||||||| |||||||| ||||||||||| | ||||||||||||    
T  5048057 aatacaattgcactcatataagtatatttataggtgcttgtagatgtttttaaaactagaataatctaggcctttg 5047982  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 5046625 - 5046572
Alignment:
Q  91 attggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat 144  Q
    ||||||||| | ||||| ||||||||| ||||||||||||| ||||||||||||    
T  5046625 attggacaaaaggacacgcattggtaagtagctcattgtaggaggagagaatat 5046572  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 5047396 - 5047343
Alignment:
Q  91 attggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat 144  Q
    ||||||||| | ||||| ||||||||| ||||||||||||| ||||||||||||    
T  5047396 attggacaaaaggacacgcattggtaagtagctcattgtaggaggagagaatat 5047343  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 266
Target Start/End: Complemental strand, 24853562 - 24853338
Alignment:
Q  43 tgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaat 142  Q
    |||||||||| ||||| ||| ||||||||||||  | || ||| ||||||||||||||| |||||| |||||||| ||||||||||||| |||| |||||    
T  24853562 tgttagaaaa-atatagtgtaggagctagtggtggagtgtttagtagcattggacaagaggacacatattggtaattagctcattgtaggaggaaagaat 24853464  T
Q  143 atagtatatggaagcccttaata-tattgtaattgtat-ttaaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttc 240  Q
    ||  |||   |||||| | |||| |||||  |||| || ||||| | || |||||||| ||| ||| |||| |||||||||| ||| | ||||||||||     
T  24853463 atgatatgatgaagccttcaatattattgacattgcatcttaaaggcttgaatacaattgcatccaaataagtctatttataggtgttagaagatgtttt 24853364  T
Q  241 taaaactagaagagtctaggcctttg 266  Q
    || |||||||| | | ||||||||||    
T  24853363 tagaactagaataatttaggcctttg 24853338  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 24856448 - 24856353
Alignment:
Q  49 aaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat 144  Q
    |||||||||||  |  |||||||||||  | || ||| ||||||||||||||| |||||| |||||||| ||||||||||||| ||||||||||||    
T  24856448 aaaatatatatcatatgagctagtggtggagtgtttagtagcattggacaagatgacacatattggtaattagctcattgtaggaggagagaatat 24856353  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 28788027 - 28787952
Alignment:
Q  191 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 266  Q
    |||||||| |||||||||||  |||||||||| ||| ||||||||||||||| |||||||| | ||||||||||||    
T  28788027 aatacaattgcacccatatatgtctatttataggtgtttgaagatgtttctagaactagaataatctaggcctttg 28787952  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 51246689 - 51246614
Alignment:
Q  191 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 266  Q
    |||||||| |||||||||||| |||| ||||| ||||||| ||||||||||| |||||||| | ||||||||||||    
T  51246689 aatacaattgcacccatataagtctacttataggtgcttgtagatgtttctagaactagaataatctaggcctttg 51246614  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 17525522 - 17525597
Alignment:
Q  191 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 266  Q
    ||||||||  ||| ||||||| |||||||||||| ||||| ||||||||||| |||||||| | ||||||||||||    
T  17525522 aatacaatttcacacatataagtctatttataagcgcttgtagatgtttctagaactagaataatctaggcctttg 17525597  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 248
Target Start/End: Complemental strand, 28787223 - 28787018
Alignment:
Q  48 gaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaatatagt 147  Q
    ||||| ||||| ||| ||||||| ||||| | |||||| |||||||| |||||| |||||||||| |||| || |||||| ||| |||||| |||||  |    
T  28787223 gaaaaaatatagtgtaggagctaatggtagagtggttagtagcattgaacaagaggacacacattagtaattacctcattataggaggagataatatgat 28787124  T
Q  148 ata-tgg--aagcccttaatatattgta-attgtatttaaatgt-ttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttcta 242  Q
    ||  |||  ||||| | |||||  | || |||| || |||| |  || |||||||| ||||| |||||  |||||||||| |||||||||||||||||||    
T  28787123 atggtggtgaagccttcaatattatatacattgcatctaaaaggcttgaatacaattgcaccaatatatgtctatttataggtgcttgaagatgtttcta 28787024  T
Q  243 aaacta 248  Q
     |||||    
T  28787023 gaacta 28787018  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 51246788 - 51246738
Alignment:
Q  94 ggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat 144  Q
    |||||||| |||||||||| | || ||||||||||||| ||||||||||||    
T  51246788 ggacaagaggacacacattaggaattagctcattgtaggaggagagaatat 51246738  T

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Target: scaffold0406 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 6460 - 6272
Alignment:
Q  80 tggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaatatagtatatggaagcccttaatat-attgtaattgta 178  Q
    |||||| ||||||||||||||| |||||||||| | || ||||||||| ||| |||||| |||||  | |   |||||| | ||||| ||||  |||| |    
T  6460 tggttagtagcattggacaagatgacacacattaggaattagctcattataggaggagataatatgattttgtgaagccttcaatattattgacattgca 6361  T
Q  179 ttt-aaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 266  Q
    | | ||| | || ||||||||  ||||||||||| |||||||||| |||||||||| |||||||| |||||||| | ||||||||||||    
T  6360 tctcaaaggcttgaatacaatttcacccatataagtctatttataggtgcttgaagctgtttctagaactagaataatctaggcctttg 6272  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 22622406 - 22622481
Alignment:
Q  191 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 266  Q
    |||||||| ||||||||||||  |||||||||||||| |||||||||||||| || ||||| | |||||| |||||    
T  22622406 aatacaattgcacccatataagcctatttataagtgcctgaagatgtttctagaattagaataatctaggtctttg 22622481  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 29371961 - 29371922
Alignment:
Q  200 gcacccatataattctatttataagtgcttgaagatgttt 239  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  29371961 gcacccatataaatctatttataagtgcttgaagatgttt 29371922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 145
Target Start/End: Original strand, 22056427 - 22056530
Alignment:
Q  41 attgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagaga 140  Q
    |||||| ||||| ||||| ||| ||||| | ||||| | | |||| ||||||||||||||| |||||| ||| |||| || |||||||||  ||||||||    
T  22056427 attgttggaaaa-atatagtgtaggagccaatggtagatttgttagtagcattggacaagaggacacatatttgtaattaactcattgtatgaggagaga 22056525  T
Q  141 atata 145  Q
    |||||    
T  22056526 atata 22056530  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 22055518 - 22055571
Alignment:
Q  213 tctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 266  Q
    |||||||||||||||||||||||| ||||| ||||| || | |||||| |||||    
T  22055518 tctatttataagtgcttgaagatgattctagaactaaaataatctaggtctttg 22055571  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 12739409 - 12739334
Alignment:
Q  191 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 266  Q
    |||||||| ||| ||| |||||||||||||||  |||||| ||||||||||| ||||| || | ||||||| ||||    
T  12739409 aatacaattgcatccaaataattctatttatagatgcttgtagatgtttctagaactaaaataatctaggcttttg 12739334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 12738258 - 12738201
Alignment:
Q  191 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaacta 248  Q
    |||||||| ||||||| |||| | |||||||| ||||||| ||||||||||| |||||    
T  12738258 aatacaattgcacccaaataagtttatttataggtgcttgtagatgtttctagaacta 12738201  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 1275221 - 1275291
Alignment:
Q  180 ttaaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactaga 250  Q
    ||||| |||| |||||||| |||||||||||  | || ||||| |||||||||| |||||||| |||||||    
T  1275221 ttaaacgtttgaatacaattgcacccatatacctatacttataggtgcttgaaggtgtttctagaactaga 1275291  T

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