View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_low_3 (Length: 526)
Name: NF3226_low_3
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 287 - 505
Target Start/End: Original strand, 46267052 - 46267270
Alignment:
| Q |
287 |
tgtgttggataatgtggtttctctttcttctcaaaatggaatgtaatgtgagaaatgtttggatccaaaatcatctcttcaatttagagcgggtcttgtt |
386 |
Q |
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| T |
46267052 |
tgtgttggataatgtggtttctctttcttctcaaaatggaatgtaatgtgagaaatgtttggatccaaaatcatctcttcaatttagagcgggtcttgtt |
46267151 |
T |
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| Q |
387 |
ccttctttccaacatatgtgtcatttgtgcatgtcaaccttaaaaaacaaaccaccgtgatggagggaaaataaacacaacactaggtccaacgaatgaa |
486 |
Q |
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| T |
46267152 |
ccttctttccaacatatgtgtcatttgtgcatgtcaaccttaaaaaacaaaccaccgtgatggagggaaaataaacacaacactaggtccaacgaatgaa |
46267251 |
T |
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| Q |
487 |
caagctagtgtctttttta |
505 |
Q |
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| T |
46267252 |
caagctagtgtctttttta |
46267270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 46266777 - 46266945
Alignment:
| Q |
12 |
atgaatcaccagcggagcggaaatcaaaacggcaatcaatacctgcatcaacgtgttcatcaaaacgacaatgcagttcaatgcatgattgacatcaata |
111 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46266777 |
atgattcaccagcggagcggaaatcaaaaccgcaatcaatacctgcatcaacatgttcatcaaaacgacaatgcagttcaatgcatgattgacatcaata |
46266876 |
T |
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| Q |
112 |
aaaacatatacgtaaatgggaaaaacataatcattcttatatgaatatgaatagtggtatatacctggt |
180 |
Q |
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| T |
46266877 |
aaaacatatacgtaaatgggaaaaacataatcattcttatatgaatatgaatagtggtatatacctggt |
46266945 |
T |
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