View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3226_low_30 (Length: 274)

Name: NF3226_low_30
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3226_low_30
NF3226_low_30
[»] chr7 (14 HSPs)
chr7 (16-267)||(31585819-31586066)
chr7 (16-266)||(31576409-31576653)
chr7 (16-266)||(31614943-31615187)
chr7 (16-264)||(31605075-31605317)
chr7 (17-266)||(31608670-31608913)
chr7 (19-265)||(31595469-31595709)
chr7 (16-265)||(31572420-31572660)
chr7 (16-265)||(33304745-33304990)
chr7 (16-265)||(31438593-31438836)
chr7 (16-265)||(31618679-31618922)
chr7 (16-265)||(31532774-31533014)
chr7 (19-265)||(31541434-31541671)
chr7 (45-159)||(32351742-32351856)
chr7 (204-248)||(32357255-32357299)
[»] chr1 (1 HSPs)
chr1 (16-264)||(52173888-52174130)
[»] chr4 (1 HSPs)
chr4 (16-257)||(15062948-15063183)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 31585819 - 31586066
Alignment:
16 aattcatatatcaatgctcttttgttcacctcatagcaaaagcctaaaagtgacacaatgttgatgtgtgatgttctactaatgctagcaacttcattta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
31585819 aattcatatatcaatgctcttttgttcacctcatagcaaaagcctaaaagtgatacaatgttgatgtgtgatgttctactaatgctagaaacttcattta 31585918  T
116 tgaattcttctccatttcccttttattcgtttattactttcaccgccacttgtggttgtcgaccatcacttaaacttgcattgtacacaacaccatatcc 215  Q
    ||||||||||||||||||||||   ||| ||||||||||||||||||||       || |||||||||||||||| ||| ||||||||||||||||||||    
31585919 tgaattcttctccatttcccttagtttcatttattactttcaccgccac------atgacgaccatcacttaaacatgctttgtacacaacaccatatcc 31586012  T
216 tccttgacctaattta--tctcgaaatgagtttgtgatcctttttacttctgtg 267  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
31586013 tccttgacctaatttatctctcgaaatgagtttgtgatcctttttacttctgtg 31586066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 31576409 - 31576653
Alignment:
16 aattcatatatcaatgctcttttgttcacctcatagcaaaagcctaaaagtgacacaatgttgatgtgtgatgttctactaatgctagcaacttcattta 115  Q
    ||||||||||| | ||||||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||    
31576409 aattcatatattagtgctcttttgtccacctcataacaaaagcctaaaagggacacaatgttcatgtgtgatgttcgactaatgctagcaacttcattta 31576508  T
116 tgaattcttctccatttcccttttattcgtttattactttcaccgccacttgtggttgtcgaccatcacttaaacttgcattgtacacaacaccatatcc 215  Q
    ||||||||||||||||||| ||  |||| ||||||||||||||||||||      ||| ||||||||| |||||||||| ||||| ||||||||||||||    
31576509 tgaattcttctccatttcctttggattcatttattactttcaccgccac------ttgacgaccatcaattaaacttgctttgtaaacaacaccatatcc 31576602  T
216 tccttgacctaatttatctcgaaatgagtttgtgatcctttttacttctgt 266  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||    
31576603 tccttggcctaatttatcccgaaatgagtttgtgatcctttttacttctgt 31576653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 31614943 - 31615187
Alignment:
16 aattcatatatcaatgctcttttgttcacctcatagcaaaagcctaaaagtgacacaatgttgatgtgtgatgttctactaatgctagcaacttcattta 115  Q
    ||||||||||| | ||||||||||||||||||||| |||||||||||||| || |||||||| |||||| |||||| |||||||||||||||||||||||    
31614943 aattcatatattagtgctcttttgttcacctcataacaaaagcctaaaagggatacaatgttcatgtgtaatgttcgactaatgctagcaacttcattta 31615042  T
116 tgaattcttctccatttcccttttattcgtttattactttcaccgccacttgtggttgtcgaccatcacttaaacttgcattgtacacaacaccatatcc 215  Q
    ||||||||||||||||||||||| | || |||| |||||||||||||||       || ||||||||| |||||||||| ||||||||||||||||||||    
31615043 tgaattcttctccatttccctttgactcatttagtactttcaccgccac------atgacgaccatcaattaaacttgctttgtacacaacaccatatcc 31615136  T
216 tccttgacctaatttatctcgaaatgagtttgtgatcctttttacttctgt 266  Q
    |||||| |||||||||||||| || |||||||| |||||||||||||||||    
31615137 tccttggcctaatttatctcggaaagagtttgttatcctttttacttctgt 31615187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 31605075 - 31605317
Alignment:
16 aattcatatatcaatgctcttttgttcacctcatagcaaaagcctaaaagtgacacaatgttgatgtgtgatgttctactaatgctagcaacttcattta 115  Q
    ||||||||||| | ||||||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||    
31605075 aattcatatattagtgctcttttgtccacctcataacaaaagcctaaaagggacacaatgttcatgtgtgatgttcgactaatgctagcaacttcattta 31605174  T
116 tgaattcttctccatttcccttttattcgtttattactttcaccgccacttgtggttgtcgaccatcacttaaacttgcattgtacacaacaccatatcc 215  Q
    ||||||||||||||||||| ||  |||| ||||||||||||||||||||      ||| ||||||||| |||||||||| ||||| ||||||||||||||    
31605175 tgaattcttctccatttcctttggattcatttattactttcaccgccac------ttgacgaccatcaattaaacttgctttgtaaacaacaccatatcc 31605268  T
216 tccttgacctaatttatctcgaaatgagtttgtgatcctttttacttct 264  Q
    |||||| ||||||||| |||| || |||||||| |||||||||| ||||    
31605269 tccttggcctaatttaactcggaaagagtttgttatcctttttatttct 31605317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 31608670 - 31608913
Alignment:
17 attcatatatcaatgctcttttgttcacctcatagcaaaagcctaaaagtgacacaatgttgatgtgtgatgttctactaatgctagcaacttcatttat 116  Q
    |||||||||| |  |||||||| ||||||||||| ||||| ||||| |||||||||||||| | ||||||||||||||| ||||||||||||||||||||    
31608670 attcatatattagcgctcttttattcacctcataacaaaaacctaagagtgacacaatgttcaggtgtgatgttctactgatgctagcaacttcatttat 31608769  T
117 gaattcttctccatttcccttttattcgtttattactttcaccgccacttgtggttgtcgaccatcacttaaacttgcattgtacacaacaccatatcct 216  Q
    ||| ||||| |||||||| ||| | ||||||||||||||||| |||||      ||| ||||||||  |||||||||| |||||||||||||||||||||    
31608770 gaactcttccccatttccttttgactcgtttattactttcactgccac------ttgacgaccatccgttaaacttgctttgtacacaacaccatatcct 31608863  T
217 ccttgacctaatttatctcgaaatgagtttgtgatcctttttacttctgt 266  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||    
31608864 ccatggcctaatttatctcgaaatgagtttgtgatcctttttacttctgt 31608913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 31595469 - 31595709
Alignment:
19 tcatatatcaatgctcttttgttcacctcatagcaaaagcctaaaagtgacacaatgttgatgtgtgatgttctactaatgctagcaacttcatttatga 118  Q
    |||||||| | ||||||||| ||  |||| || ||| | |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
31595469 tcatatattagtgctcttttatttgcctcgtaacaataacctaaaagtgacacaatgttcatgtgtgatgttctactgatgctagcaacttcatttatga 31595568  T
119 attcttctccatttcccttttattcgtttattactttcaccgccacttgtggttgtcgaccatcacttaaacttgcattgtacacaacaccatatcctcc 218  Q
    | ||||| |||||||| ||| | ||||||||||||||||| |||||      ||| ||||||||  |||||||||| |||||||||||||||||||||||    
31595569 actcttccccatttccttttgactcgtttattactttcactgccac------ttgacgaccatccgttaaacttgctttgtacacaacaccatatcctcc 31595662  T
219 ttgacctaatttatctcgaaatgagtttgtgatcctttttacttctg 265  Q
     || ||||||||||| || ||||||||||||||||||||||||||||    
31595663 gtggcctaatttatcacggaatgagtttgtgatcctttttacttctg 31595709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 31572660 - 31572420
Alignment:
16 aattcatatatcaatgctcttttgttcacctcatagcaaaagcctaaaagtgacacaatgttgatgtgtgatgttctactaatgctagcaacttcattta 115  Q
    ||||||||||| | |||||||||||||   ||||| || || || |||||||| |||||||| |  ||||||||||||||||||||||||||||||||||    
31572660 aattcatatattagtgctcttttgttc---tcataacagaaacccaaaagtgagacaatgttcacatgtgatgttctactaatgctagcaacttcattta 31572564  T
116 tgaattcttctccatttcccttttattcgtttattactttcaccgccacttgtggttgtcgaccatcacttaaacttgcattgtacacaacaccatatcc 215  Q
    ||||||||||||||| ||||||  |||||||||||||||| ||||||||      ||| | |||||||  ||||||||| |||||||| |||||||||||    
31572563 tgaattcttctccatctcccttagattcgtttattactttaaccgccac------ttgacaaccatcaggtaaacttgctttgtacacgacaccatatcc 31572470  T
216 tccttgacctaatttatctcgaaatgagtttgtgatcctttttacttctg 265  Q
    ||||| ||||||||||||||||||||||||||| || ||||| |||||||    
31572469 tccttaacctaatttatctcgaaatgagtttgtcattcttttcacttctg 31572420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 33304990 - 33304745
Alignment:
16 aattcatatatcaatgctcttttgttcacctcatagcaaaagcctaaaagtgacacaatgttga--tgtg---tgatgttctactaatgctagcaacttc 110  Q
    |||||||||||||  ||||||||||||   ||||| ||||| || |||||||| |||||||| |  ||||   ||| |||||||||||||||||||||||    
33304990 aattcatatatcagagctcttttgttc---tcataacaaaaacccaaaagtgagacaatgttcacatgtgacgtgacgttctactaatgctagcaacttc 33304894  T
111 atttatgaattcttctccatttcccttttattcgtttattactttcaccgccacttgtggttgtcgaccatcacttaaacttgcattgtacacaacacca 210  Q
    |||||| ||||||||||||||||||||  | || |||||||||||||| ||||||||       |||||||||  ||| ||||| |||||||||||||||    
33304893 atttataaattcttctccatttcccttggactcttttattactttcactgccacttga------cgaccatcaggtaagcttgctttgtacacaacacca 33304800  T
211 tatcctccttgacctaatttatctcgaaatgagtttgtgatcctttttacttctg 265  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||    
33304799 tatcctccttgacctaatttatctcgaaatgagtttgtcattctttttacttctg 33304745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 31438836 - 31438593
Alignment:
16 aattcatatatcaatgctcttttgttcacctcatagcaaaagcctaaaagtgacacaatgttgatgtgtgatgttctactaatgctagcaacttcattta 115  Q
    ||||||||||||||||| |||||||||   ||||| ||||| || |||||||| |||||||| |  ||||||||| |||| ||||| |||||||||||||    
31438836 aattcatatatcaatgcacttttgttcttttcataacaaaaacccaaaagtgagacaatgttcacatgtgatgttttacttatgcttgcaacttcattta 31438737  T
116 tgaattcttctccatttcccttttattcgtttattactttcaccgccacttgtggttgtcgaccatcacttaaacttgcattgtacacaacaccatatcc 215  Q
    | ||||||||||| | ||||||  | ||  |||||||||||||||| || ||       || ||||||  ||||||||| ||||||||||||||||||||    
31438736 taaattcttctccgtctcccttgcactcacttattactttcaccgcaacatga------cggccatcaggtaaacttgctttgtacacaacaccatatcc 31438643  T
216 tccttgacctaatttatctcgaaatgagtttgtgatcctttttacttctg 265  Q
    ||||||||| || |||||||||||||||||||||| |||||| |||||||    
31438642 tccttgacccaacttatctcgaaatgagtttgtgaaccttttcacttctg 31438593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 265
Target Start/End: Original strand, 31618679 - 31618922
Alignment:
16 aattcatatatcaatgctcttttgttcacctcatagcaaaagcctaaaagtgacacaatgttgatgtgtgatgttctactaatgctagcaacttcattta 115  Q
    ||||||||||| |  |||||||||||| | || || ||| | |||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||    
31618679 aattcatatattagcgctcttttgttctcttcgtaacaatatcctaaaagcgacacaatgttcatatgtgatgtcctactaatgctagcaacttcattta 31618778  T
116 tgaattcttctccatttcccttttattcgtttattactttcaccgccacttgtggttgtcgaccatcacttaaacttgcattgtacacaacaccatatcc 215  Q
    |||||||||||||||||||||||   ||| ||||||||||||| |||||      ||| |||| || |  ||||||||| ||||| ||||||||||| ||    
31618779 tgaattcttctccatttccctttgtctcgcttattactttcactgccac------ttgacgactattatataaacttgctttgtagacaacaccataccc 31618872  T
216 tccttgacctaatttatctcgaaatgagtttgtgatcctttttacttctg 265  Q
    |||||| ||||| || ||||||||  ||||||||||| |||| |||||||    
31618873 tccttggcctaacttttctcgaaaatagtttgtgatcattttcacttctg 31618922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 265
Target Start/End: Original strand, 31532774 - 31533014
Alignment:
16 aattcatatatcaatgctcttttgttcacctcatagcaaaagcctaaaagtgacacaatgttgatgtgtgatgttctactaatgctagcaacttcattta 115  Q
    ||||||||||| | |||||||||||||   ||||||||||| || |||||||| || ||||| |  |||||||||||||||||||| ||||||||||||     
31532774 aattcatatattagtgctcttttgttc---tcatagcaaaaacccaaaagtgaaacgatgttcacatgtgatgttctactaatgcttgcaacttcatttg 31532870  T
116 tgaattcttctccatttcccttttattcgtttattactttcaccgccacttgtggttgtcgaccatcacttaaacttgcattgtacacaacaccatatcc 215  Q
    |||||||||||| |||||||||| | |||||||||||||||||||||||      ||  |||||||||  |||  |||| ||||| || | |||||||||    
31532871 tgaattcttctctatttccctttgactcgtttattactttcaccgccac------ttcacgaccatcaggtaagtttgctttgtaaaccataccatatcc 31532964  T
216 tccttgacctaatttatctcgaaatgagtttgtgatcctttttacttctg 265  Q
    ||||||||| ||| | ||||||||||||||||| || ||||| |||||||    
31532965 tccttgacccaatctgtctcgaaatgagtttgtcattcttttcacttctg 31533014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 31541434 - 31541671
Alignment:
19 tcatatatcaatgctcttttgttcacctcatagcaaaagcctaaaagtgacacaatgttgatgtgtgatgttctactaatgctagcaacttcatttatga 118  Q
    |||||||| | |||||||||||||   ||||| ||||| || |||||||| |||||||| |  |||||||||||||||||||||||||||||||||||||    
31541434 tcatatattagtgctcttttgttc---tcataacaaaatcccaaaagtgagacaatgttcacatgtgatgttctactaatgctagcaacttcatttatga 31541530  T
119 attcttctccatttcccttttattcgtttattactttcaccgccacttgtggttgtcgaccatcacttaaacttgcattgtacacaacaccatatcctcc 218  Q
    | |||||||||||||||||  | || ||||| | |||||| || ||      ||| |||||||||  |||  |||| ||||| |||||||||||||||||    
31541531 aatcttctccatttcccttagactcatttataattttcactgctac------ttgacgaccatcaggtaagtttgctttgtaaacaacaccatatcctcc 31541624  T
219 ttgacctaatttatctcgaaatgagtttgtgatcctttttacttctg 265  Q
    ||||||||||||||||||||| |||||||| ||  |||| |||||||    
31541625 ttgacctaatttatctcgaaacgagtttgtcatttttttcacttctg 31541671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 32351742 - 32351856
Alignment:
45 ctcatagcaaaagcctaaaagtgacacaatgttgatgtgtgatgttctactaatgctagcaacttcatttatgaattcttctccatttcccttttattcg 144  Q
    |||||| ||||| || |||||||| |||||||| |  ||||| |||||| |||| ||| | |||||||||||||| |||| ||||| ||||||| | ||     
32351742 ctcataacaaaaacccaaaagtgaaacaatgttcacatgtgaggttctagtaattctatctacttcatttatgaaatcttttccatctccctttgaatca 32351841  T
145 tttattactttcacc 159  Q
    ||||||| |||||||    
32351842 tttattattttcacc 32351856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 32357299 - 32357255
Alignment:
204 aacaccatatcctccttgacctaatttatctcgaaatgagtttgt 248  Q
    ||||||| ||||| ||| ||||||||||||||||||| |||||||    
32357299 aacaccaaatccttcttcacctaatttatctcgaaataagtttgt 32357255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 52174130 - 52173888
Alignment:
16 aattcatatatcaatgctcttttgttcacctcatagcaaaagcctaaaagtgacacaatgttgatgtgtgatgttctactaatgctagcaacttcattta 115  Q
    ||||||||||| | ||||||||||||||||||||| ||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
52174130 aattcatatattagtgctcttttgttcacctcataacaatagcctaaaagtgacacaatgttcacgtgtgatgttctactaatgctagcaacttcattta 52174031  T
116 tgaattcttctccatttcccttttattcgtttattactttcaccgccacttgtggttgtcgaccatcacttaaacttgcattgtacacaacaccatatcc 215  Q
    |||||||||||||||  |||||| | |||||||||||||| || |||||      ||| |||||||||  ||||||||| ||||| ||||||||||||||    
52174030 tgaattcttctccatccccctttaactcgtttattactttaacagccac------ttgacgaccatcaggtaaacttgctttgtatacaacaccatatcc 52173937  T
216 tccttgacctaatttatctcgaaatgagtttgtgatcctttttacttct 264  Q
    |||||| |||||||||||||| || || |||||||||||||||| ||||    
52173936 tccttggcctaatttatctcggaaagattttgtgatcctttttatttct 52173888  T

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Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 15063183 - 15062948
Alignment:
16 aattcatatatcaatgctcttttgttcacctcatagcaaaagcctaaaagtgacacaatgttgatgtgtgatgttctactaatgctagcaacttcattta 115  Q
    |||||||||||||||||||||||||||  |||||| ||||| || |||||||| |||| ||| || ||||||||| |  | ||||| |||||||||||||    
15063183 aattcatatatcaatgctcttttgttcttctcataacaaaaacccaaaagtgaaacaacgttcatatgtgatgtttttgttatgcttgcaacttcattta 15063084  T
116 tgaattcttctccatttcccttttattcgtttattactttcaccgccacttgtggttgtcgaccatcacttaaacttgcattgtacacaacaccatatcc 215  Q
    | ||||||||||| ||||||||  | ||| |||| ||||||||||| ||       || || ||||||  |||||| || ||||| ||||||||||||||    
15063083 taaattcttctccgtttcccttgcactcgcttatcactttcaccgctac------atgacggccatcaggtaaactggctttgtaaacaacaccatatcc 15062990  T
216 tccttgacctaatttatctcgaaatgagtttgtgatcctttt 257  Q
    |||||| || || ||||||||||| |||||||||| ||||||    
15062989 tccttggcccaacttatctcgaaacgagtttgtgaacctttt 15062948  T

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