View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_low_34 (Length: 252)
Name: NF3226_low_34
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 3083979 - 3083743
Alignment:
| Q |
1 |
cattcaaattcgagaaattgcaatttagtctcttaaaatgaaccgttagtcaatttaatcattgttaaaatttagcaaatttaagagatatcttggtgaa |
100 |
Q |
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| T |
3083979 |
cattcgaattcgagaaattgcaatttagtctcttaaaatgaaccgttagtcaatttaatcattgttaaaatttagcaaatttaagagatatcttggtgaa |
3083880 |
T |
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| Q |
101 |
ggaactaaattattgactttctttattttaagagactaacttactattttgcaaatttgaaaaactaaatttctggactcttataatatggaagaatgga |
200 |
Q |
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| T |
3083879 |
ggaactaaattattgactttctttattttaagagactaacttactattttgcaaatttgaaaaactaaatttctggactcttataatatggaagaatgga |
3083780 |
T |
|
| Q |
201 |
atattcatttactagtaaaagaatgcacattgcttat |
237 |
Q |
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| T |
3083779 |
atattcatttactagtaaaagaatgcacattgcttat |
3083743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 3092196 - 3092163
Alignment:
| Q |
200 |
aatattcatttactagtaaaagaatgcacattgc |
233 |
Q |
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| T |
3092196 |
aatattcatttgctagtaaaagaatgcacattgc |
3092163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 41590839 - 41590799
Alignment:
| Q |
131 |
agagactaacttactattttgcaaatttgaaaaactaaatt |
171 |
Q |
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| T |
41590839 |
agagactaaattactattttgcaaatttgaaaaactgaatt |
41590799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 41513868 - 41513824
Alignment:
| Q |
127 |
tttaagagactaacttactattttgcaaatttgaaaaactaaatt |
171 |
Q |
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| T |
41513868 |
tttaagggactaacttgctattttgcaaatttgaaggactaaatt |
41513824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 40213407 - 40213451
Alignment:
| Q |
127 |
tttaagagactaacttactattttgcaaatttgaaaaactaaatt |
171 |
Q |
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||||||||||||| |||| ||||||||||||| || ||||||||| |
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| T |
40213407 |
tttaagagactaaattacaattttgcaaatttaaataactaaatt |
40213451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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