View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3226_low_4 (Length: 492)
Name: NF3226_low_4
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 476
Target Start/End: Original strand, 44622749 - 44623208
Alignment:
| Q |
11 |
ctttcttctcacgcacgctaaaaagttgtttcttatttactcccaaacccctatctcataactataaatatagagaag---------agtttttgaaggt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44622749 |
ctttcttctcacgcacgctaaaaagttgtttcttaattactcccaaacccctatctcataactataaatatagagaagcccctaaggagtttttgaaggt |
44622848 |
T |
|
| Q |
102 |
agaaacaaaggtgagacaaaaacaagagtttttctgaaagagcttatttggtatgctctttacactcnnnnnnnn--cttcctttgttatttctatttca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44622849 |
agaaacaaaggtgagacaaaaacaagagtttttctgaaagagcttatttggtatgctctttacacttttttttctttcttcctttgttatttctattt-- |
44622946 |
T |
|
| Q |
200 |
agttgtgatttcatgttagttagactatgttactaattactcacagctttactctattatctatatgcaaattttcttgtttcaatatgtaatagcatct |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44622947 |
-----------catgttagttagactatgttactaattactcacagctttactctattatctatatgcaaattttcttgtttcaatatgtaatagcatct |
44623035 |
T |
|
| Q |
300 |
ataattaaacaatagtgcacaatcgaatttaaggatcactgtgttttcttagttgtcgaaaggaatctttaattgttgggaagtataggatgtttgtagg |
399 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44623036 |
ataattaaacaatagtgcacaatcaaatttaaggatcactgtgttttcttagttgtcgaaaggaatct----ttgttgggaagtataggatgtttgtagg |
44623131 |
T |
|
| Q |
400 |
atcttataccttctttgcttgtattgcaagtatctcaattggaacaaattattaaaaccctacttcttgttattatt |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44623132 |
atcttataccttctttgcttgtattgcaagtatctcaattggaacaaattattaaaaccctacttcttgttattatt |
44623208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 44952687 - 44952640
Alignment:
| Q |
112 |
gtgagacaaaaacaagagtttttctgaaagagcttatttggtatgctc |
159 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44952687 |
gtgagacaaaaagaagagtttttctgaaagagcttattaggtatgctc |
44952640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University