View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3226_low_40 (Length: 246)

Name: NF3226_low_40
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3226_low_40
NF3226_low_40
[»] chr7 (7 HSPs)
chr7 (1-109)||(21715440-21715548)
chr7 (1-99)||(8230378-8230476)
chr7 (1-99)||(45277559-45277657)
chr7 (1-90)||(40029644-40029733)
chr7 (1-99)||(4675389-4675487)
chr7 (1-99)||(31392426-31392524)
chr7 (12-75)||(32881493-32881556)
[»] chr8 (2 HSPs)
chr8 (1-109)||(25265488-25265596)
chr8 (25-99)||(33294256-33294330)
[»] chr4 (8 HSPs)
chr4 (1-99)||(19994842-19994940)
chr4 (1-99)||(44252785-44252883)
chr4 (1-99)||(55947721-55947816)
chr4 (1-90)||(39654419-39654509)
chr4 (1-54)||(7500825-7500878)
chr4 (1-54)||(5731719-5731772)
chr4 (1-54)||(7499595-7499648)
chr4 (3-54)||(7492796-7492847)
[»] chr3 (3 HSPs)
chr3 (1-99)||(33733302-33733400)
chr3 (1-99)||(53529154-53529249)
chr3 (1-54)||(18655489-18655542)
[»] chr2 (3 HSPs)
chr2 (1-99)||(1840536-1840634)
chr2 (1-54)||(18159680-18159733)
chr2 (1-54)||(18160596-18160649)
[»] chr5 (5 HSPs)
chr5 (1-99)||(1418588-1418687)
chr5 (1-99)||(25915874-25915972)
chr5 (1-71)||(30332636-30332706)
chr5 (1-71)||(30332811-30332881)
chr5 (12-54)||(37498659-37498701)
[»] chr1 (8 HSPs)
chr1 (13-99)||(33259013-33259099)
chr1 (13-99)||(33279172-33279258)
chr1 (1-99)||(28919436-28919534)
chr1 (1-99)||(7654048-7654143)
chr1 (1-99)||(36145706-36145801)
chr1 (1-71)||(16672877-16672947)
chr1 (1-99)||(19057460-19057558)
chr1 (15-99)||(24085776-24085861)
[»] scaffold0489 (1 HSPs)
scaffold0489 (1-99)||(5673-5773)
[»] chr6 (1 HSPs)
chr6 (1-71)||(19082976-19083046)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 21715440 - 21715548
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactata 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21715440 aatttgtagagggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactata 21715539  T
Q  101 tatcattgt 109  Q
    |||||||||    
T  21715540 tatcattgt 21715548  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 8230378 - 8230476
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  8230378 aatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatcttcttcccacatcttcttcttcattactat 8230476  T

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Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 45277657 - 45277559
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  45277657 aatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcatcatctttttcccacatcttcttcttcattactat 45277559  T

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Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 40029733 - 40029644
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctt 90  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40029733 aatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatcttcttcccacatcttcttctt 40029644  T

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Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 4675487 - 4675389
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||    
T  4675487 aatttgtagagggagcaaaactaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatcttcttcccacattttcttcttcactactat 4675389  T

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Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 31392426 - 31392524
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||| | ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||| ||| ||||    
T  31392426 aatttgtaaagggaccaaaaccaaaaaacgagaagacgaaaaattcaaattttattacatttcttcatcttcttcccacattttcttcttcattgctat 31392524  T

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Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 32881493 - 32881556
Alignment:
Q  12 ggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttc 75  Q
    |||||||| |||||||||||| |||| ||||||||||||||||||| |||||||||||||||||    
T  32881493 ggaccaaagccaaaaaacgagaagacaaaaaattcaaatttaattatatttcttcatctttttc 32881556  T

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Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 25265596 - 25265488
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactata 100  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25265596 aatttgtagagggaccaaaaccaaaaaacgaggagaccaaaaattcaaatttaattacatttcttcatcttttttccacatcttcttctttattactata 25265497  T
Q  101 tatcattgt 109  Q
    |||||||||    
T  25265496 tatcattgt 25265488  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 33294256 - 33294330
Alignment:
Q  25 aaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  33294256 aaaacgagaagacgaaaaattcaaatttaattacatttcttcatcttcttcccacatcttcttcttcattactat 33294330  T

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Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 19994842 - 19994940
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  19994842 aatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatcttcttcccacatcttcttcttcattactat 19994940  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 44252883 - 44252785
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||| | || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  44252883 aatttgtaaaggggccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatcttcttcccacattttcttcttcattactat 44252785  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 55947721 - 55947816
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||||| |||||||||||||||||| ||   || ||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  55947721 aatttgtagagggaccaaaaccaaaaaacaag---acaaaaaattcaaatttaattacatttcttcatcttcttcccacattttcttcttcattactat 55947816  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 39654509 - 39654419
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaattta-attacatttcttcatctttttcccacatcttcttctt 90  Q
    |||||||||| ||||||||||||||||| ||| |||| |||| || |||||||  ||||||||||||||||| ||| ||  ||||||||||    
T  39654509 aatttgtagagggaccaaaaccaaaaaaagagaagacaaaaattttaaatttagtttacatttcttcatcttattctcatgtcttcttctt 39654419  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7500878 - 7500825
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaa 54  Q
    |||||||||| |||||||||| |||||||||| || ||||||||||||||||||    
T  7500878 aatttgtagagggaccaaaacaaaaaaacgagaagtcgaaaaattcaaatttaa 7500825  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 5731719 - 5731772
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaa 54  Q
    |||||||||| ||||||||||||||||||||| ||  |||||||| ||||||||    
T  5731719 aatttgtagagggaccaaaaccaaaaaacgagaagtagaaaaatttaaatttaa 5731772  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 7499595 - 7499648
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaa 54  Q
    |||||||||| ||| ||||||||||||||||| |  ||||||||||||||||||    
T  7499595 aatttgtagagggatcaaaaccaaaaaacgagaaatcgaaaaattcaaatttaa 7499648  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 7492847 - 7492796
Alignment:
Q  3 tttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaa 54  Q
    |||||||| |||||||||| |||||| ||| || ||||||||||||||||||    
T  7492847 tttgtagagggaccaaaacaaaaaaatgagaagtcgaaaaattcaaatttaa 7492796  T

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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 33733302 - 33733400
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  33733302 aatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatcttcttcccacatcttcttcttcattactat 33733400  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 53529249 - 53529154
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||||| |||| ||||||||||||| ||   |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  53529249 aatttgtagagggacaaaaaccaaaaaacaag---acgaaaaattcaaatttaattacatttcttcatcttcttcccacattttcttcttcattactat 53529154  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 18655489 - 18655542
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaa 54  Q
    |||||||||| ||||||||||||||||||||| ||  |||||||| ||||||||    
T  18655489 aatttgtagagggaccaaaaccaaaaaacgagaagtagaaaaatttaaatttaa 18655542  T

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Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 1840536 - 1840634
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  1840536 aatttgtagagggaccaaaacaaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatcttcttcccacatcttcttcttcattactat 1840634  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 18159680 - 18159733
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaa 54  Q
    |||| ||||| ||||||||| ||||||||||| ||  |||||||||||||||||    
T  18159680 aattcgtagagggaccaaaatcaaaaaacgagaagttgaaaaattcaaatttaa 18159733  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 18160596 - 18160649
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaa 54  Q
    |||| ||||| ||||||||| ||||||||||| ||  |||||||||||||||||    
T  18160596 aattcgtagagggaccaaaatcaaaaaacgagaagttgaaaaattcaaatttaa 18160649  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 1418687 - 1418588
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaa-cgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  1418687 aatttgtagagggaccaaaaccaaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatcttcttcccacatcttcttcttcattactat 1418588  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 25915972 - 25915874
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||||| ||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  25915972 aatttgtagagggaccaaaaccaaaaaacgagaaaatgaaaaattcaaatttaattacatttcttcatcttcttcccacattttcttcttcattactat 25915874  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30332636 - 30332706
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctt 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30332636 aatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctt 30332706  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30332811 - 30332881
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctt 71  Q
    |||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  30332811 aatttgtagagggaccaaaaccaaaaaacgagaagacaaaaaattcaaatttaattacatttcttcatctt 30332881  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 37498701 - 37498659
Alignment:
Q  12 ggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaa 54  Q
    ||||||||||||||||| ||| |||| ||||||||||||||||    
T  37498701 ggaccaaaaccaaaaaatgagaagacaaaaaattcaaatttaa 37498659  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 33259099 - 33259013
Alignment:
Q  13 gaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  33259099 gaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattatatttcttcatctttttcccacatcttcttcttcattactat 33259013  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 33279258 - 33279172
Alignment:
Q  13 gaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  33279258 gaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattatatttcttcatctttttcccacatcttcttcttcattactat 33279172  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 28919436 - 28919534
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| |||| ||||||||||||| ||||||||    
T  28919436 aatttgtagagggaccaaaaccaaaaaacgagaagatgaaaaatttaaatttaattacatttcttcatcttcttccgacatcttcttcttcattactat 28919534  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 7654048 - 7654143
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||||| |||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  7654048 aatttgtagagggaccaaaaccaaaaaacaag---acgaaaaattcaaatttaattacatttcttcatcttcttcccacattttcttcttcattactat 7654143  T

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Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 36145706 - 36145801
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||||| |||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  36145706 aatttgtagagggaccaaaaccaaaaaacaag---acgaaaaattcaaatttaattacatttcttcatcttcttcccacattttcttcttcattactat 36145801  T

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Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 16672947 - 16672877
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctt 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16672947 aatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctt 16672877  T

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Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 19057558 - 19057460
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattactat 99  Q
    |||||||| | || |||||||||||||||||| | | |||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  19057558 aatttgtatagggtccaaaaccaaaaaacgagaatatgaaaaattcaaatttaattacatttcttcatcttcttcccacattttcttcttcattactat 19057460  T

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Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 24085776 - 24085861
Alignment:
Q  15 ccaaaaccaaaaaacgaggagacgaaaaattcaaatttaatt-acatttcttcatctttttcccacatcttcttctttattactat 99  Q
    ||||||||||||||| || ||| |||||||||||||||| || ||||||||||||||| |||||||||||||||||| || |||||    
T  24085776 ccaaaaccaaaaaacaagaagaggaaaaattcaaatttagtttacatttcttcatcttcttcccacatcttcttcttcatcactat 24085861  T

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Target: scaffold0489 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 5673 - 5773
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgagga-gacgaaaaatt-caaatttaattacatttcttcatctttttcccacatcttcttctttattacta 98  Q
    ||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  5673 aatttgtagaaggaccaaaaccaaaaaacgaagaagacgaaaaattacaaatttaattacatttcttcatcttcttcccacatcttcttcttcattacta 5772  T
Q  99 t 99  Q
    |    
T  5773 t 5773  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 19082976 - 19083046
Alignment:
Q  1 aatttgtagaaggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctt 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19082976 aatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctt 19083046  T

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