View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_low_44 (Length: 239)
Name: NF3226_low_44
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 6356619 - 6356833
Alignment:
| Q |
4 |
tcacaaacataaaaatgagtcatttaacacacacacaatgtaatnnnnnnnnttgatttggtgttgtggtctaatttaacacttactatataagtatttc |
103 |
Q |
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| T |
6356619 |
tcacaaacataaaaatgagtcatttaacacacaca--atgtaataaaaaaaattgatttggtgttgtggtctaatttaacacttactatataagtatttc |
6356716 |
T |
|
| Q |
104 |
tccatccaaagatggatccaaaaatctattagcaattttagttcatggcctaatttattttcttgtttgggagtccttttgtaacaatacttgttttttc |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| ||||||||| |
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| T |
6356717 |
tccatccaaagatggatccaaaaatctattagcaattttagttcacggcctaatttattctcttgtttgggagt-cttttgtaacaatttttgttttttt |
6356815 |
T |
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| Q |
204 |
attttggattgacggcaa |
221 |
Q |
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||||||| |||||||||| |
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| T |
6356816 |
attttgggttgacggcaa |
6356833 |
T |
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