View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_low_5 (Length: 490)
Name: NF3226_low_5
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 559237 - 558991
Alignment:
| Q |
1 |
aaaagcacatgttcaagtagaattgaccatctcaatcatgaaatgtttgaaagattaattagcagacaagagattctaaataggttagccaaaccaataa |
100 |
Q |
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| T |
559237 |
aaaagcacatgttcaagtagaattgaccatctcaatcatgaaatgtttgaaagattaattagcagacaagagattttaaataggttagccaaaccaataa |
559138 |
T |
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| Q |
101 |
ataaaccacaaacacctcctaccattttatctcaacaaacttcagtcaagccactgac-------aatttaatcaatttttctaagaatctcttgtttta |
193 |
Q |
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| T |
559137 |
ataaaacacaaacacctcctagcattttatctcaacaaacttcagtcaagccactgacactttaaagtttaatctatttttctaagaatctcttgtttta |
559038 |
T |
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| Q |
194 |
accaaagagactcttacaaaagaatatgtctcattggctgtttccatgt |
242 |
Q |
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| T |
559037 |
accaaagagactcttacaaaaga--atgtctcatgggcttttttcatgt |
558991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 533457 - 533409
Alignment:
| Q |
58 |
attagcagacaa-gagattctaaataggttagccaaaccaataaataaa |
105 |
Q |
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|||||||||||| |||||||||||| |||||||| ||||||||| |||| |
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| T |
533457 |
attagcagacaaagagattctaaattggttagcccaaccaataattaaa |
533409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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