View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_low_50 (Length: 227)
Name: NF3226_low_50
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 46581816 - 46582023
Alignment:
| Q |
1 |
acagtgattctattctggtgaagtaaatatgtgagaaattnnnnnnnnnntatcaaagaatacaaaattcttaaaccctttctctttctaaagaaataag |
100 |
Q |
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| T |
46581816 |
acagtgattctattctagtgaagtaaatatgtgagaaattaaaaaaaaaa-atcaaagaatacaaaattcttaaaccctttctctttctaaagaaataag |
46581914 |
T |
|
| Q |
101 |
caaagcagatatttctttatatctgctatataatataagtcgtcctttacaaagagaatttcagaatgagaatgtctcataacaacatctcaccaagcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46581915 |
caaagcagatatttctttatatctgctatataatataagtcatcctttacaacgagaatttcagaatgagaatgtctcataacaacatctcatcaagcat |
46582014 |
T |
|
| Q |
201 |
ccaaataat |
209 |
Q |
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||||||||| |
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| T |
46582015 |
ccaaataat |
46582023 |
T |
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