View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3226_low_53 (Length: 219)
Name: NF3226_low_53
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_53 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 28968137 - 28967956
Alignment:
| Q |
17 |
agtaatgaagttccaaactatggaacctaaaatctttaacccgaccgtaagcaatttgtagttcccacaccaggtttccaagcaaagtattattgacttt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28968137 |
agtaatgaagttccaaactatggaacctaaaatctttcacccgaccgtaagcaatttgtagttcccacaccaggtttccaagcaaagtattattgacttt |
28968038 |
T |
|
| Q |
117 |
tgtgaccattctcatttctcacacctaagccacagttgtttctagccaaagttatcacattcgatgttccttttcatataaagtctctg |
205 |
Q |
| |
|
|||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28968037 |
tgtggcca-------ttctcacacctaagctacagatgtttctagccaaagttatcacattcgatgttccttttcatataaagtctctg |
28967956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 29796464 - 29796316
Alignment:
| Q |
24 |
aagttccaaactatggaacctaaaatctttaacccgaccgtaagcaatttgtagttcccacaccaggtttccaagcaaagtattattgacttttgtgacc |
123 |
Q |
| |
|
||||||||||||||||||| | |||||||| ||| ||| ||||| | ||||| |||||||| | ||||||||||||| |||| ||||||||||||| || |
|
|
| T |
29796464 |
aagttccaaactatggaacttgaaatctttcacctgacagtaagtagtttgtggttcccacgctaggtttccaagcatagtaatattgacttttgtagcc |
29796365 |
T |
|
| Q |
124 |
attctcatttctcacacctaagccac-agttgtttctagccaaagttatcacattc |
178 |
Q |
| |
|
|||||||| ||||||||||| | || |||||||||||| ||||||||||| |
|
|
| T |
29796364 |
attctcat-------acctaagccacaatttttttctagccaaaattatcacattc |
29796316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 34082578 - 34082674
Alignment:
| Q |
24 |
aagttccaaactatggaacctaaaatctttaaccc-gaccgtaagcaatttgtagttcccacaccaggtttccaagcaaagtattattgacttttgt |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| ||| ||||| | ||||| |||||||||||||||||||||||| |||| | ||||||||||| |
|
|
| T |
34082578 |
aagttccaaactatggaacctgaaatcttataccttgacagtaagtagtttgtggttcccacaccaggtttccaagcatagtaatgttgacttttgt |
34082674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University