View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3226_low_7 (Length: 436)

Name: NF3226_low_7
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3226_low_7
NF3226_low_7
[»] chr4 (2 HSPs)
chr4 (19-197)||(40614172-40614349)
chr4 (207-273)||(17558824-17558890)
[»] chr1 (3 HSPs)
chr1 (208-273)||(38236310-38236375)
chr1 (206-273)||(6923503-6923570)
chr1 (208-256)||(51387129-51387177)
[»] chr8 (1 HSPs)
chr8 (205-260)||(16367864-16367919)
[»] chr5 (3 HSPs)
chr5 (205-260)||(16349712-16349767)
chr5 (208-273)||(16222680-16222745)
chr5 (208-260)||(4082576-4082628)
[»] chr7 (1 HSPs)
chr7 (208-245)||(7853691-7853728)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 40614172 - 40614349
Alignment:
Q  19 gggagaaagaaacaaagtggagatgnnnnnnnggacagaaattttgttagtgttgtgaaaaacagagaaatggttgctatgtacaacctaaattttctta 118  Q
    ||||||||||||||||||||| |||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  40614172 gggagaaagaaacaaagtggaaatgaaaaaaaggacagaaattttgtgagtgttgtgaaaaacagagaaatggttgctatgtaca-cctaaattttctga 40614270  T
Q  119 tgatttggtttggtccttgtcttctttactttgtttaagacaagactaagctaacctcgtacagttgagctttattata 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40614271 tgatttggtttggtccttgtcttctttactttgtttaagacaagactaagctaacctcgtacagttgagctttattata 40614349  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 17558824 - 17558890
Alignment:
Q  207 aactagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacattaactgaaattcatt 273  Q
    |||||||||||||||||||||   |||||||||||||||| || ||||| || |  |||||||||||    
T  17558824 aactagatcgtctacccgtgctgccgcacgggtcatatatagccaaaaagataatatgaaattcatt 17558890  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 273
Target Start/End: Original strand, 38236310 - 38236375
Alignment:
Q  208 actagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacattaactgaaattcatt 273  Q
    |||||||||||||||||||||   ||||||||||||||| |||||||||||||  |||| ||||||    
T  38236310 actagatcgtctacccgtgcggcagcacgggtcatatatagctaaaaacattagttgaacttcatt 38236375  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 6923570 - 6923503
Alignment:
Q  206 aaactagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacattaactgaaattcatt 273  Q
    ||||||||||||||||||||||    ||||||||||||||| |||||||| ||||  |||| ||||||    
T  6923570 aaactagatcgtctacccgtgcagcagcacgggtcatatatagctaaaaatattagttgaacttcatt 6923503  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 51387129 - 51387177
Alignment:
Q  208 actagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaac 256  Q
    ||||||||||||||||||||   |||||||||||||||| | |||||||    
T  51387129 actagatcgtctacccgtgctgccgcacgggtcatatatagttaaaaac 51387177  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 16367919 - 16367864
Alignment:
Q  205 gaaactagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacatta 260  Q
    |||||||||||||||||||||||   |||||||||||||||| | | |||||||||    
T  16367919 gaaactagatcgtctacccgtgctgccgcacgggtcatatatagtttaaaacatta 16367864  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 16349712 - 16349767
Alignment:
Q  205 gaaactagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacatta 260  Q
    |||||||||||||| ||||||||   |||||||||||||||| | |||||||||||    
T  16349712 gaaactagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacatta 16349767  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 16222745 - 16222680
Alignment:
Q  208 actagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacattaactgaaattcatt 273  Q
    ||||||||||||||||||||   |||||  ||||||||| |||||||||||||  |||| ||||||    
T  16222745 actagatcgtctacccgtgctgccgcacatgtcatatatagctaaaaacattagttgaacttcatt 16222680  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 4082628 - 4082576
Alignment:
Q  208 actagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacatta 260  Q
    ||||||||||| ||||||||   |||||||||||||||| | |||||||||||    
T  4082628 actagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacatta 4082576  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 7853728 - 7853691
Alignment:
Q  208 actagatcgtctacccgtgcgaacgcacgggtcatata 245  Q
    |||||||||||||||||||| | |||||||||||||||    
T  7853728 actagatcgtctacccgtgctaccgcacgggtcatata 7853691  T

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