View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_low_8 (Length: 417)
Name: NF3226_low_8
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 36251104 - 36250713
Alignment:
| Q |
16 |
atattatcttcatgaaactcattcttgactataccaaactccaaacttgcacttgaattttcaatagagagtactttgttaggaacaacataacttacaa |
115 |
Q |
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| T |
36251104 |
atattatcttcatgaaactcattcttgactataccaaactccaaacttgcacttgaattttcaatagagagtactttgttaggaacaacataacttacaa |
36251005 |
T |
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| Q |
116 |
aatcaaataccaacacaaacttttacacataccaaccaaaaagctcacaaaatataagaaccaataacgaatggcgagacattgatgcacgagctgtggc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36251004 |
aatcaaataccaacacaaacttttacacataccaaccaaaaagctcacaaaatataagaaccaataacgaatggcgagacattgatgcacgagctgtgac |
36250905 |
T |
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| Q |
216 |
ataagcattaggattgaattcatgtctttttatcatttcgctttccaaaggggaatgatattcgaatgaatccaaccttcttcttctgatgtgctatgga |
315 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36250904 |
ataagcattagaattgaattcatgtctttttatcatttcgctttccaaaggggaatgatattcgaatgaatccaaccttcttcttctgatgtgctatgga |
36250805 |
T |
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| Q |
316 |
ctgcttttggtcgcccccgtcattctcatgttcagttggaagagtttgattttccctcattgctcgaagcatttgactcaatgctacctttg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36250804 |
ctgcttttggtcgcccccgtcattctcatgttcagttggaagagtttgattttccctcattgctcgaagcatttgactcaatgctacctttg |
36250713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 367 - 406
Target Start/End: Original strand, 32500774 - 32500813
Alignment:
| Q |
367 |
ttccctcattgctcgaagcatttgactcaatgctaccttt |
406 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||| |
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| T |
32500774 |
ttccctcagtgctcgaagcatttggctcaatgctaccttt |
32500813 |
T |
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