View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_low_9 (Length: 406)
Name: NF3226_low_9
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_9 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 13 - 406
Target Start/End: Complemental strand, 4849632 - 4849238
Alignment:
| Q |
13 |
aatatttgaaagtgttaaaatcagatatacacacaattaataaatagccacaaaataaagagaaaacatatatagaagcagttcaaattatatatttcaa |
112 |
Q |
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| T |
4849632 |
aatatttgaaagtgttaaaatcagatatacacacaattaataaatagccacaaaataaagagaaaacatatatagaagcagttcaaattatatatttcaa |
4849533 |
T |
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| Q |
113 |
atcagaaacaacttgattcggattgaataatccaaaagagaagttttagggcaaaaagagaaacacaactttggaggactgtggagtaacataattaaag |
212 |
Q |
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| T |
4849532 |
accagaaacaacttaattcggattgaataatccaaaagagaagttttagggaaaaaagagaaacacaattttagaggactgtggagtaacataattaaag |
4849433 |
T |
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| Q |
213 |
tgagagtgaaattaacattagtaacatatatgtcaagctaccaaataattcgtgcagtatgaccaaaagaactgaacattttagcattttctttataata |
312 |
Q |
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|||||||||| || |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4849432 |
tgagagtgaagtttacatcagtaacatatatgtcaagctaccaaataatttgtgcagtatgaccaaaagaactgaacattttagcattttttttataata |
4849333 |
T |
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| Q |
313 |
aactagtgaaaagacggggactcacgtgcgcatctttctgc-nnnnnnnattacattaacgtgtatagattatctacgataatttatagaaattc |
406 |
Q |
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| T |
4849332 |
aactagtgcaaagacgggcatttacgtgcgcatctttctgcttttttttattacgtgaacgtgtatagattatctatgataatttatagaaattc |
4849238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 146 - 406
Target Start/End: Complemental strand, 4862692 - 4862432
Alignment:
| Q |
146 |
aaaagagaagttttagggcaaaaagagaaacacaactttggaggactgtggagtaacataattaaagtgagagtgaaattaacattagtaacatatatgt |
245 |
Q |
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| T |
4862692 |
aaaagagaagttttagggcaaaaagagaaacacgattttagaggactgtggagtaacataattaaagtgagagtgaaattaacattagtaacatatatgc |
4862593 |
T |
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| Q |
246 |
caagctaccaaataattcgtgcagtatgaccaaaagaactgaacattttagcattttctttataataaactagtgaaaagacggggactcacgtgcgcat |
345 |
Q |
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| T |
4862592 |
caggctaccaaataattcgtgcagtatgaccaaaataattgaacattttaacattttctttataataaactagtgaaaagacgggcactcacgtgcgcat |
4862493 |
T |
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| Q |
346 |
ctttctgcnnnnnnnattacattaacgtgtatagattatctacgataatttatagaaattc |
406 |
Q |
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| T |
4862492 |
ctttcttctctttttactacgttaacgtgtatagattatctacgataatttatagaaattc |
4862432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 4862883 - 4862691
Alignment:
| Q |
13 |
aatatttgaaagtgttaaaatcagatatacacacaattaataaatagccacaaaataaagagaaaacatatatagaagcagttcaaattatatatttcaa |
112 |
Q |
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|||||||||||||||||||||||||| |||| |||||||| ||||| |||||||||||||| | |||||||||| ||||||||||||||||||| | ||| |
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| T |
4862883 |
aatatttgaaagtgttaaaatcagatgtacaaacaattaacaaatatccacaaaataaagaaacaacatatataaaagcagttcaaattatataatccaa |
4862784 |
T |
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| Q |
113 |
atcagaaacaacttgattcggattgaataatccaaaagagaagttttagggcaaaaagagaaacacaactttggaggactgtggagtaacataa |
206 |
Q |
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| T |
4862783 |
accagat-caacttgattcggattgaataatcaaaaagagaagttttagggcaaaaagagaaacacgattttagaggattgtggagtaacataa |
4862691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 149 - 406
Target Start/End: Complemental strand, 4857704 - 4857448
Alignment:
| Q |
149 |
agagaagttttagggcaaaaagagaaacacaactttgga-ggactgtggagtaacataattaaagtgagagtgaaattaacattagtaacatatatgtca |
247 |
Q |
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||||||||||||||||||||||||||||| | || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
4857704 |
agagaagttttagggcaaaaagagaaacattatttcagagggactctggagtaacataattaaagtgagagtgaaattaacattagtaacatatatataa |
4857605 |
T |
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| Q |
248 |
agctaccaaataattcgtgcagtatgaccaaaagaactgaacattttagcattttctttataataaactagtgaaaagacggggactcacgtgcgcatct |
347 |
Q |
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||||||||||||||| ||| ||||||| ||||||||| |||| |||||||| |||||||||||||||||| ||||||||| | | |||| || ||||| |
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| T |
4857604 |
agctaccaaataatttgtgtagtatga-caaaagaaccaaaca-tttagcatattctttataataaactagcgaaaagacgagcattcacatgttcatct |
4857507 |
T |
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| Q |
348 |
ttctgcnnnnnnnattacattaacgtgtatagattatctacgataatttatagaaattc |
406 |
Q |
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| T |
4857506 |
ttctgctctttttattacgttaatgtgtataaattatttacgataatttattgaaattc |
4857448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 367 - 405
Target Start/End: Complemental strand, 4846626 - 4846588
Alignment:
| Q |
367 |
ttaacgtgtatagattatctacgataatttatagaaatt |
405 |
Q |
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| T |
4846626 |
ttaacgtgtatagattatctacgataatttatagaaatt |
4846588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 4857941 - 4857885
Alignment:
| Q |
80 |
atatatagaagcagttcaaattatatatttcaaatcagaaacaacttgattcggatt |
136 |
Q |
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| T |
4857941 |
atatatagaagcatgtcaaattatataatccaaaccaggaacaacttgattcagatt |
4857885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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