View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3227R-Insertion-1 (Length: 989)

Name: NF3227R-Insertion-1
Description: NF3227R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3227R-Insertion-1
NF3227R-Insertion-1
[»] chr3 (52 HSPs)
chr3 (182-973)||(46490567-46491357)
chr3 (301-939)||(46479679-46480325)
chr3 (310-917)||(46497858-46498471)
chr3 (462-933)||(46483944-46484414)
chr3 (457-921)||(46473838-46474302)
chr3 (9-166)||(46491384-46491541)
chr3 (566-918)||(5160187-5160538)
chr3 (298-417)||(51944306-51944425)
chr3 (706-918)||(5156157-5156369)
chr3 (462-870)||(45883487-45883900)
chr3 (733-918)||(51943802-51943987)
chr3 (568-790)||(46236657-46236882)
chr3 (574-826)||(47414062-47414313)
chr3 (568-917)||(16025394-16025746)
chr3 (306-410)||(46506843-46506952)
chr3 (312-409)||(47413797-47413894)
chr3 (297-417)||(5160693-5160813)
chr3 (674-908)||(46526394-46526627)
chr3 (850-921)||(46531828-46531899)
chr3 (313-404)||(46553795-46553886)
chr3 (297-415)||(46474341-46474459)
chr3 (462-657)||(46539170-46539371)
chr3 (312-404)||(46532342-46532434)
chr3 (673-888)||(47397276-47397491)
chr3 (297-404)||(5156674-5156781)
chr3 (675-786)||(45902998-45903109)
chr3 (313-404)||(46544913-46545004)
chr3 (455-517)||(5156567-5156629)
chr3 (297-399)||(46484474-46484576)
chr3 (303-403)||(46236382-46236482)
chr3 (857-921)||(46538894-46538958)
chr3 (569-644)||(4581246-4581321)
chr3 (347-402)||(46539443-46539498)
chr3 (556-767)||(46554035-46554246)
chr3 (329-401)||(46526031-46526103)
chr3 (303-404)||(46535370-46535471)
chr3 (568-657)||(46544645-46544734)
chr3 (569-632)||(4613703-4613766)
chr3 (335-410)||(16025901-16025976)
chr3 (303-401)||(46548602-46548700)
chr3 (535-633)||(51944087-51944185)
chr3 (456-513)||(46526167-46526224)
chr3 (462-510)||(4581139-4581187)
chr3 (462-510)||(4613596-4613644)
chr3 (103-163)||(46498700-46498760)
chr3 (473-517)||(46548765-46548809)
chr3 (734-785)||(46549016-46549067)
chr3 (568-615)||(47397171-47397218)
chr3 (347-404)||(4581015-4581072)
chr3 (465-510)||(46236545-46236590)
chr3 (852-921)||(46544366-46544435)
chr3 (852-917)||(46554334-46554399)
[»] chr4 (7 HSPs)
chr4 (568-906)||(35155342-35155680)
chr4 (453-908)||(35162361-35162821)
chr4 (306-410)||(15556432-15556536)
chr4 (568-654)||(15556188-15556274)
chr4 (313-407)||(35155835-35155929)
chr4 (835-918)||(15555924-15556007)
chr4 (453-510)||(35155744-35155801)
[»] chr8 (6 HSPs)
chr8 (464-654)||(21463943-21464139)
chr8 (462-906)||(9692469-9692919)
chr8 (535-908)||(9675526-9675899)
chr8 (303-414)||(9675300-9675411)
chr8 (303-414)||(9692322-9692433)
chr8 (312-401)||(21463785-21463874)
[»] chr7 (10 HSPs)
chr7 (300-402)||(17736950-17737052)
chr7 (302-402)||(17718537-17718637)
chr7 (312-402)||(17699604-17699694)
chr7 (302-402)||(17708713-17708813)
chr7 (302-402)||(17736367-17736467)
chr7 (312-402)||(16722590-16722680)
chr7 (302-393)||(16730588-16730679)
chr7 (798-921)||(17708182-17708306)
chr7 (798-921)||(17718006-17718130)
chr7 (850-921)||(17735836-17735907)
[»] chr2 (3 HSPs)
chr2 (303-406)||(20168618-20168721)
chr2 (303-406)||(20359563-20359666)
chr2 (572-657)||(20144802-20144887)


Alignment Details
Target: chr3 (Bit Score: 684; Significance: 0; HSPs: 52)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 182 - 973
Target Start/End: Complemental strand, 46491357 - 46490567
Alignment:
Q  182 tctatgaggaaacatatggaaaggcaggtaaatcatctacctacattctcattttactaacatcatattgtcaggaaaaataaattccctatttatctat 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46491357 tctatgaggaaacatatggaaaggcaggtaaatcatctacctacattctcattttactaacatcatattgtcaggaaaaataaattccctatttatctat 46491258  T
Q  282 tggcgagtgtggcacgctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaa 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46491257 tggcgagtgtggcacgctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaa 46491158  T
Q  382 agggtggtcagctacaaagtctagtcgagttggaaaacccatgccactgctagtcattacttcagttacggtggctgcaacagcttcggtgccttcttca 481  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||    
T  46491157 agggtggccagccacaaagtctagtcgagttggaaaacccatgccactgctagtgaatacttcagttgcggtggctgcaacagcttcggtgccttcttca 46491058  T
Q  482 tttacgtcaataaaagacttgtgaaatattttagaactacataggttttgactagagttcaccattttagtaagacctccattggtgaaaggtaaaacca 581  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46491057 tttacatcaataaaagacttgtgaaatattttagaaatacataggttttgactagagttcaccattttagtaagacctccattggtgaaaggtaaaacca 46490958  T
Q  582 cgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctacccccactctatcatatggaagctt 681  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46490957 cgcccagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctacctccactctatcatatggaagctt 46490858  T
Q  682 gtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattgacgctta 781  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46490857 gtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattcacgctta 46490758  T
Q  782 tcttcgcctccccttataaggaaggccaagaactttaaaatcatcg-aagctctaatatattgttcttccttgctagtcatgaagggaaccttaattgag 880  Q
    |||||||||   |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46490757 tcttcgcct-tgcttataaggaaggccaagaactttaaaatcatcgaaagctctaatatattgttcttccttgctagtcatgaagggaaccttaattgag 46490659  T
Q  881 ctgccattcaaaaggtgaaaatcatagtctttcgtttttg-agcatc-aacttatcattcccacactcttttgaggtaataagtgcattagcaat 973  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| ||||| |||   ||||||||||||||    
T  46490658 ctgccattcaaaaggtgaaaatcatagtctttcgtttttgaagcatcaaacttatcatt-ccacactcctttgaagta--tagtgcattagcaat 46490567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 301 - 939
Target Start/End: Complemental strand, 46480325 - 46479679
Alignment:
Q  301 aaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaag 400  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  46480325 aaatcacccagcaagaggattgagcacctgtccaacaaagatgattgttccggtcaagtcttctctaatcataaataagaaagggtggtcagctacaaag 46480226  T
Q  401 tctagtcgagttggaaaacccatgccactgctagtcattacttcagttacggtggctgcaacagcttcggtgccttcttcatttacgtcaataaaagact 500  Q
    ||||| |||| ||||| || |||| | || ||   || ||     |   | || || ||| ||||||| ||||||||||||||||| ||||| |||||||    
T  46480225 tctagccgaggtggaatactcatggcgctccttaacaatatagttgcagcagttgccgcagcagcttcagtgccttcttcatttacttcaatgaaagact 46480126  T
Q  501 tgtgaaatattttagaactacataggttttgacta------gagttcaccattttagtaagacctccattggtgaaaggtaaaaccacgcctagctcctt 594  Q
    |||||||||| || |||  ||| ||||||||||||      ||||||||||| || || |||||||||   | ||||||||||||||| |||||||||||    
T  46480125 tgtgaaatatattggaaacacaaaggttttgactaactgaagagttcaccatctttgtcagacctccaccagagaaaggtaaaaccacacctagctcctt 46480026  T
Q  595 cagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctacccccactctatcatatggaagcttgtgttttagtgac 694  Q
     ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||  ||||| || || |||||||||||||||  |||  |    
T  46480025 tagcatatcagaagtttcaagtccaaatgaaatattgaactttggaatcctaaagtcacctacttccactttaccaaatggaagcttgtgttgcagtagc 46479926  T
Q  695 tccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgcctcccc 794  Q
    || ||||||||||||| ||| || | ||||| || || ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||   |    
T  46479925 tcagattcagaagccaccttttcgaccaaagctgccaacccatcttttgcatttggaagaaaaaagtacatggtgaattgacgcttatcttcgcct-tgc 46479827  T
Q  795 ttataaggaaggccaagaactttaaaatcatc-gaagctctaatatattg-ttcttccttgctagtcatgaagggaaccttaattgagctgccattcaaa 892  Q
    ||||||||||| || |||||||||||| ||||  ||||||||||| | || ||||| |||||| ||||||||||||||||| | || ||| |||||||||    
T  46479826 ttataaggaagaccgagaactttaaaaccatcaaaagctctaataaactgcttctt-cttgctggtcatgaagggaaccttgactgggctaccattcaaa 46479728  T
Q  893 aggtgaaaatcatagtctttcgtttttg-agcatc-aacttatcattcc 939  Q
    |||||||| || ||||||| |||||||| |||||| |||||||||||||    
T  46479727 aggtgaaactcgtagtcttccgtttttgaagcatcaaacttatcattcc 46479679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 310 - 917
Target Start/End: Complemental strand, 46498471 - 46497858
Alignment:
Q  310 agcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta-gtcg 408  Q
    |||||||||||||| |||||| |||||||||| ||| ||||| ||||| |||||||| || ||||| ||||| ||||||||||||||||||| || |||     
T  46498471 agcaagaggattgagcacctgcccaacaaagacgatagttccggtcaaatcttctctgataataaataagaatgggtggtcagctacaaagtttatgtct 46498372  T
Q  409 agttggaaaacccatgccactgctagtcattacttcagttacggtggctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaat 508  Q
     ||||||| || || |   || | |  ||| | |  |  | ||||||| ||| |||||| |||||||||||||||||| ||||| ||||||||||| |||    
T  46498371 -gttggaagactcaaggagcttcca--cat-agtaaacctgcggtggccgcagcagctttggtgccttcttcatttacttcaatgaaagacttgtggaat 46498276  T
Q  509 attttagaactacataggttttgact------agagttcaccattttagtaagacctccattggtgaaaggtaaaaccacgcctagctccttcagcatat 602  Q
    ||||| |||  | | |||||||||||      |||||||||||||||||| | ||||||||| |||||||| ||||||||||| |||||||| | |||||    
T  46498275 attttggaaacataaaggttttgactcacagcagagttcaccattttagtcaaacctccattagtgaaaggcaaaaccacgccaagctcctttaacatat 46498176  T
Q  603 cagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctacccccactctatcatatggaagcttgtgttttagtgactccgattc 702  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||  ||||| | |||   |||||||||||||  ||| |||| |||||    
T  46498175 cagaagtttcaagttcaaatgaaatattgaaccttggaatcctaaagtcacctacttccactttgtcaagaggaagcttgtgttgcagtaactcagattc 46498076  T
Q  703 agaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgcctccccttataagg 802  Q
     ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||   |||||||||    
T  46498075 ggaagcaagcttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatcgtaaattgacgcttgtcttcgcct-tgcttataagg 46497977  T
Q  803 aaggccaagaactttaaaatcatcg-aagctctaatatattg-ttct--tccttgctagtcatgaagggaaccttaattgagctgccattcaaaaggtga 898  Q
    ||||||||||||||||||||||||| || |||||||| | || ||||  || |  ||||||||||||  |||||||| |||| | |||||||||||||||    
T  46497976 aaggccaagaactttaaaatcatcgaaatctctaataaactgcttcttctcatcactagtcatgaagtcaaccttaactgagtttccattcaaaaggtga 46497877  T
Q  899 aaatcatagtctttcgttt 917  Q
    ||||||||| | |||||||    
T  46497876 aaatcatagacattcgttt 46497858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 462 - 933
Target Start/End: Complemental strand, 46484414 - 46483944
Alignment:
Q  462 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaactacataggttttgactagagttcaccattttagtaagacctcc 561  Q
    ||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| || ||   ||| || |||||| ||||||||||||| || || ||||||||    
T  46484414 cagcttcagtgccttcttcatttacttcaatgaaagatttgtgcaatatattggac--acaaagtttttgattagagttcaccatctttgtcagacctcc 46484317  T
Q  562 attggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctaccccc 661  Q
    |   | ||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||  ||    
T  46484316 accagagaaaggtaaaaccacacctagctcctttagcataacagaagtttcaagtccaaatgaaatattgaactttggaatcctaaagtcacctacttcc 46484217  T
Q  662 actctatcatatggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagt 761  Q
    ||| ||||| | ||||||||||||| |||| | ||  |||||||||||| ||| |||| |||| |||| |||||||||||||||||||||||||||||||    
T  46484216 actttatcaaaaggaagcttgtgttgtagtaaatcaaattcagaagccaccttttcaaccaaacttggaagcccatcttttgcatttggaagaaaaaagt 46484117  T
Q  762 acatagtaaattgacgcttatcttcgcctccccttataaggaaggccaagaactttaaaatcatc-gaagctctaatatattg-ttcttccttgctagtc 859  Q
    ||||||| ||  |||||||||||||||||   |||||||||||| ||||||||||||||| ||||  ||||||||||| | || ||||| ||||||||||    
T  46484116 acatagtgaaacgacgcttatcttcgcct-tgcttataaggaagaccaagaactttaaaaccatcaaaagctctaataaactgcttctt-cttgctagtc 46484019  T
Q  860 atgaagggaaccttaattgagctgccattcaaaaggtgaaaatcatagtctttcgtttt-tgagcatcaacttat 933  Q
    || ||||||||||| | |||||||||||| | ||||||||||||||||||||| ||||| | |||||||||||||    
T  46484018 ataaagggaaccttgactgagctgccattgagaaggtgaaaatcatagtcttttgttttgtaagcatcaacttat 46483944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 457 - 921
Target Start/End: Complemental strand, 46474302 - 46473838
Alignment:
Q  457 tgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaactacataggttttgactagagttcaccattttagtaaga 556  Q
    |||| ||||||| ||||||||||||||||| ||||| ||| | ||||| ||||| || ||  || | || |||||| |||||| ||||||||| || ||     
T  46474302 tgcagcagcttcagtgccttcttcatttacttcaatgaaatatttgtgcaatatattggacataaaaagtttttgattagagtccaccatttttgtcagc 46474203  T
Q  557 cctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcaccta 656  Q
    ||| ||   | ||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  46474202 ccttcaccagagaaaggtaaaaccacacctagctcctttagcatatcggaagtttcaagtccaaatgaaatattgaactttggaatcctaaagtcaccta 46474103  T
Q  657 cccccactctatcatatggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaa 756  Q
    |  ||||| ||||| | ||||||||||||| |||| | || ||||||||||||| ||| |||| |||| |||| ||||||||||||||||||||||||||    
T  46474102 cttccactttatcaaaaggaagcttgtgttgtagtaaatcagattcagaagccaccttttcaaccaaacttggaagcccatcttttgcatttggaagaaa 46474003  T
Q  757 aaagtacatagtaaattgacgcttatcttcgcctccccttataaggaaggccaagaactttaaaatcatc-gaagctctaatatattg-ttcttccttgc 854  Q
    |||||||||||| ||  |||||||||||||||||   |||||||||||| ||||||||||||||| ||||  ||||||||||| | || ||||| |||||    
T  46474002 aaagtacatagtgaaacgacgcttatcttcgcct-tgcttataaggaagaccaagaactttaaaaccatcaaaagctctaataaactgcttctt-cttgc 46473905  T
Q  855 tagtcatgaagggaaccttaattgagctgccattcaaaaggtgaaaatcatagtctttcgtttttga 921  Q
    ||||||| |||| |||||||| |||||||||||| | ||||| ||||||||||||||| ||| ||||    
T  46473904 tagtcataaaggaaaccttaactgagctgccattgagaaggtaaaaatcatagtcttttgttgttga 46473838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 46491541 - 46491384
Alignment:
Q  9 cgtgtgcccaaccagatttaatgtttaccactatattccttctgattctatatatatccttccaattaccttggcaggtgttagatatcatgagttgtta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46491541 cgtgtgcccaaccagatttaatgtttaccactatattccttctgattctatatatatccttccaattaccttggcaggtgttagatatcatgagttgtta 46491442  T
Q  109 aagaaattaaaggaagcctaccaaaatttattaaaatacacaagtatgaactcttcgg 166  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  46491441 aagaaattaaaggaagtctaccaaaatttattaaaatacacaagtatgaactcatcgg 46491384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 566 - 918
Target Start/End: Complemental strand, 5160538 - 5160187
Alignment:
Q  566 gtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctacccccactc 665  Q
    ||||||||||||  ||| |||| |||||||||||||||||||||||||||  |||||||||| ||||| ||||| || || || ||||||||  |  ||     
T  5160538 gtgaaaggtaaagtcactcctaactccttcagcatatcagaagtttcaagctcaaatgaaattttgaatcttggaattctgaattcacctacttcttctt 5160439  T
Q  666 tatcatatggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacat 765  Q
     |  |    ||| | |||| | |||| |||| ||||||||||||| ||||| || |||||| | ||  |||||||||||||||||||| |||| ||||||    
T  5160438 caggaagatgaaacctgtggtgtagtaactcagattcagaagccaccttcttaaccaaagtcgacaagccatcttttgcatttggaaggaaaatgtacat 5160339  T
Q  766 agtaaattgacgcttatcttcgcctccccttataaggaaggccaagaactttaaaatcatcg-aagctctaatatattgttcttccttgctagtcatgaa 864  Q
    ||  ||| |||||||||||| ||||  | ||||| ||||| | |||||||||||| || ||  |||||  |||| | || |  |||| ||| ||||||||    
T  5160338 agagaatggacgcttatctttgcctttc-ttatacggaagacgaagaactttaaagtcgtcataagcttcaataaactgattctcctcgctggtcatgaa 5160240  T
Q  865 gggaaccttaattgagctgccattcaaaaggtgaaaatcatagtctttcgtttt 918  Q
    ||||||||| | |||||| |||||||||||||||||||||||||||||||||||    
T  5160239 gggaaccttgactgagct-ccattcaaaaggtgaaaatcatagtctttcgtttt 5160187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 298 - 417
Target Start/End: Complemental strand, 51944425 - 51944306
Alignment:
Q  298 ctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctaca 397  Q
    |||| ||||||| | ||| || |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  51944425 ctaagatcacccggtaagtgggttgagcacctgtccaacaaagatgattgttccagtcaaatcttctctaatcagaaataagaaagggtggtcagctaca 51944326  T
Q  398 aagtctagtcgagttggaaa 417  Q
    ||||||||| ||| ||||||    
T  51944325 aagtctagttgagatggaaa 51944306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 706 - 918
Target Start/End: Complemental strand, 5156369 - 5156157
Alignment:
Q  706 agccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgcctccccttataaggaag 805  Q
    |||||||||||||| ||| | |||||| |||||||| |||||||||||||||| ||||||||  ||| |||||||||||| ||||    ||||| |||||    
T  5156369 agccaacttctcaaccaatgctggcagtccatctttagcatttggaagaaaaatgtacatagagaatcgacgcttatctttgcctttt-ttatacggaag 5156271  T
Q  806 gccaagaactttaaaatcatcg-aagctctaatatattgttcttccttgctagtcatgaagggaaccttaattgagctgccattcaaaaggtgaaaatca 904  Q
     | ||||||||||||  || |  |||||  |||| | || |  |||| ||| ||||||||||||||||| |  |||||||||||||||||||||||||||    
T  5156270 acgaagaactttaaagccaccataagcttcaataaactgattctcctcgctggtcatgaagggaaccttgaccgagctgccattcaaaaggtgaaaatca 5156171  T
Q  905 tagtctttcgtttt 918  Q
    ||||||||||||||    
T  5156170 tagtctttcgtttt 5156157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 462 - 870
Target Start/End: Original strand, 45883487 - 45883900
Alignment:
Q  462 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaactacataggttttgactag---agttcaccattttagtaagacc 558  Q
    ||||||| |||||||||||||| || ||||| ||||||| |||||| || | |||| || | |||| |||| | |   ||| ||||||||| || | ||     
T  45883487 cagcttcagtgccttcttcattaacttcaatgaaagactagtgaaaaatgtgagaaatataaaggtcttgatttggatagtccaccatttttgtcaaact 45883586  T
Q  559 tccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctacc 658  Q
    ||||   | ||||||| ||||||| |||| |||||||| ||||| |||||||||||| |||||||||| |||||| ||||| || || |||||||||||     
T  45883587 tccacgagagaaaggtgaaaccactcctaactccttcaacatattagaagtttcaagcccaaatgaaacattgaatcttggaattctgaagtcacctact 45883686  T
Q  659 cccactctatcatatggaagcttgtgt--tttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaa 756  Q
       ||| ||  ||    |||||| |||  | |||| |    ||||||||||||| |||||| | ||||| || ||| |||||||||||||||||||||||    
T  45883687 ttgactttagaatgacaaagcttttgtggtgtagtaatgtagattcagaagccaccttctcgaccaaagctgacagtccatcttttgcatttggaagaaa 45883786  T
Q  757 aaagtacatagtaaattgacgcttatcttcgcctccccttataaggaaggccaagaactttaaaatcatc-gaagctctaatatattgttcttccttgct 855  Q
    |||||||||||  ||| ||||||||||| | |||   || |||||| |  | ||| ||||||||| ||||  ||||||||||| |||| |||| ||||||    
T  45883787 aaagtacatagagaatcgacgcttatctccacct-tgctcataagggatacaaagcactttaaaaccatcaaaagctctaataaattgatctttcttgct 45883885  T
Q  856 agtcatgaagggaac 870  Q
     ||||||||||||||    
T  45883886 ggtcatgaagggaac 45883900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 733 - 918
Target Start/End: Complemental strand, 51943987 - 51943802
Alignment:
Q  733 cccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgcctccccttataaggaaggccaagaactttaaaatcatc-gaagc 831  Q
    ||||||||||||||||||||||||||| |||||||  ||||| ||||||||||| |||   ||||||||||||   ||||||||||||||||||  || |    
T  51943987 cccatcttttgcatttggaagaaaaaaatacatagagaattggcgcttatcttcacct-ttcttataaggaagatgaagaactttaaaatcatcataaac 51943889  T
Q  832 tctaatatattg-ttcttccttgctagtcatgaagggaaccttaattgagctgccattcaaaaggtgaaaatcatagtctttcgtttt 918  Q
    |  |||| | || |||||  ||||| ||||||||||||||||| | |||||| ||||| | ||||||||||||||| ||||| |||||    
T  51943888 ttcaataaactgcttctt-attgctggtcatgaagggaaccttgactgagctaccatttagaaggtgaaaatcataatctttagtttt 51943802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 568 - 790
Target Start/End: Original strand, 46236657 - 46236882
Alignment:
Q  568 gaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctacccccactcta 667  Q
    ||||||||||| ||| |||| |||||||| | ||| || |||||||| |||||| ||||||||||| ||||| ||| | || ||||||||| ||||| |     
T  46236657 gaaaggtaaaatcactcctaactccttcatcgtattagtagtttcaattccaaacgaaatattgaatcttggaatcttgaactcacctaccgccactttt 46236756  T
Q  668 tcatatg----gaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtac 763  Q
    | | |||    |||| ||||||| | || ||||  |||||||||||| |||||||| ||| |||| || |||||||||||||| |||||||||||  |||    
T  46236757 tta-atgagaggaagattgtgttctggtaactcaaattcagaagccagcttctcaaccaaggttgacaacccatcttttgcatctggaagaaaaatatac 46236855  T
Q  764 atagtaaattgacgcttatcttcgcct 790  Q
    ||||  ||||||| || ||||| ||||    
T  46236856 atagagaattgacactcatctttgcct 46236882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 574 - 826
Target Start/End: Original strand, 47414062 - 47414313
Alignment:
Q  574 taaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctacccccactctatcatat 673  Q
    |||| |||| |||| ||||||||| ||||||||| ||||  || |||||||||  ||||| ||||| || || |||||||||||    ||| ||  |       
T  47414062 taaacccactcctaactccttcaggatatcagaaatttcttgttcaaatgaaaccttgaatcttggaattctgaagtcacctactttgactttagaaaga 47414161  T
Q  674 ggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaatt 773  Q
     |||||||||| | |||| |||| ||||||||||||| |||||||| ||||| || ||| |||||| |||  ||||||||||||| ||||||||  ||||    
T  47414162 tgaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgtgtttggaagaaaaatgtacatagagaatt 47414261  T
Q  774 gacgcttatcttcgcctccccttataaggaaggccaagaactttaaaatcatc 826  Q
      ||| ||||||| |||    ||||||||||||| ||||||||||||||||||    
T  47414262 tccgcgtatcttctcct-ttattataaggaaggcaaagaactttaaaatcatc 47414313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 568 - 917
Target Start/End: Complemental strand, 16025746 - 16025394
Alignment:
Q  568 gaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctacccccactcta 667  Q
    |||||||||||| || || ||||||||||||||||||||||||||||  ||||||||||  ||||||||||| || || || |||||||| | |  |  |    
T  16025746 gaaaggtaaaactactccaagctccttcagcatatcagaagtttcaaacccaaatgaaaccttgaaccttggaattctgaaatcacctactctcttttga 16025647  T
Q  668 tcata---tggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtaca 764  Q
      | |     |||| || || | ||||  ||| |||| |||||||| | |||||| |||||  | ||| |||||| || |||||||||||||||| ||||    
T  16025646 gaaaaacgccgaagattttggtgtagtacctcggattgagaagccaccctctcaatcaaagcagacagtccatctctttcatttggaagaaaaaaataca 16025547  T
Q  765 tagtaaattgacgcttatcttcgcctccccttataaggaaggccaagaactttaaaatcatcg-aagctctaatatattgttcttccttgctagtcatga 863  Q
    |   |||||||||||||||||| |||   | | || ||||| | ||| ||||| ||||||||| |||| | |||| |||| || || ||||| |||||||    
T  16025546 ttcaaaattgacgcttatcttcaccttgtc-tgtatggaagacgaagtactttgaaatcatcgaaagcacaaataaattgatcctcgttgctggtcatga 16025448  T
Q  864 agggaaccttaattgagctgccattcaaaaggtgaaaatcatagtctttcgttt 917  Q
    ||||||| || |||  | ||||||||| || |||||||||||||||||| ||||    
T  16025447 agggaactttgattacgttgccattcagaatgtgaaaatcatagtcttttgttt 16025394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 306 - 410
Target Start/End: Original strand, 46506843 - 46506952
Alignment:
Q  306 acccagcaagaggattgaacacctgtccaacaaa-----gatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaag 400  Q
    |||||||||||||||||| |||||||||||||||     || ||||||||| ||| | |||||| |||| | ||| ||||| ||||||||||||||||||    
T  46506843 acccagcaagaggattgagcacctgtccaacaaattaaagaggattgttccggtccaatcttctttaattagaaataagaatgggtggtcagctacaaag 46506942  T
Q  401 tctagtcgag 410  Q
    ||||||||||    
T  46506943 tctagtcgag 46506952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 312 - 409
Target Start/End: Original strand, 47413797 - 47413894
Alignment:
Q  312 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctagtcga 409  Q
    |||||||||||| ||| ||||||||||||| ||||||| | ||  | ||||||||||| | ||| |||||||||||||| ||||||||||||||||||    
T  47413797 caagaggattgagcacatgtccaacaaagaggattgtttcggttgaatcttctctaattagaaataagaaagggtggtcggctacaaagtctagtcga 47413894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 297 - 417
Target Start/End: Complemental strand, 5160813 - 5160693
Alignment:
Q  297 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 396  Q
    ||||| ||||| || ||||||||||||  || |||||||||||||  || ||||||||| | ||||||||||||| ||| ||||||||||||||||||||    
T  5160813 gctaagatcactcatcaagaggattgagtacttgtccaacaaagagaatggttccagtccaatcttctctaatcagaaataagaaagggtggtcagctac 5160714  T
Q  397 aaagtctagtcgagttggaaa 417  Q
     || || ||  ||||||||||    
T  5160713 gaaatcaagctgagttggaaa 5160693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 674 - 908
Target Start/End: Original strand, 46526394 - 46526627
Alignment:
Q  674 ggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaatt 773  Q
    ||||| ||||| | |||| |||| | ||||||||| | |||||| |  ||||||||||  |||||| ||||  |||||||||||| ||||||||  ||||    
T  46526394 ggaaggttgtggtgtagtaactcaggttcagaagctaccttctcgattaaagttggcaaaccatctcttgctcttggaagaaaaatgtacatagagaatt 46526493  T
Q  774 gacgcttatcttcgcctccccttataaggaaggccaagaactttaaaatcatcg-aagctctaatatattgttcttccttgctagtcatgaagggaacct 872  Q
    ||||||||||||| |||   |||||||||||| |  || ||||| ||| ||||| || | || ||| |||||   | || ||| ||||||||||||||||    
T  46526494 gacgcttatcttctcct-tgcttataaggaagacggagtactttgaaaccatcgaaaacactgataaattgtctattctcgctggtcatgaagggaacct 46526592  T
Q  873 taattgagctgccattcaaaaggtgaaaatcatagt 908  Q
    | | ||||||||||||  ||||||||||||||||||    
T  46526593 tgactgagctgccatt-taaaggtgaaaatcatagt 46526627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 850 - 921
Target Start/End: Complemental strand, 46531899 - 46531828
Alignment:
Q  850 cttgctagtcatgaagggaaccttaattgagctgccattcaaaaggtgaaaatcatagtctttcgtttttga 921  Q
    |||||||||||||||||||||||||||||||||||||   | |||||||||||||| |||||| ||||||||    
T  46531899 cttgctagtcatgaagggaaccttaattgagctgccaccgagaaggtgaaaatcatggtcttttgtttttga 46531828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 313 - 404
Target Start/End: Original strand, 46553795 - 46553886
Alignment:
Q  313 aagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 404  Q
    |||||||||||  || || ||||||||||  ||||| |||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||    
T  46553795 aagaggattgagaacttggccaacaaagagtattgtaccagacaaatcttctctaataaaaaacaagaaagggtggtcagctacaaagtcta 46553886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 297 - 415
Target Start/End: Complemental strand, 46474459 - 46474341
Alignment:
Q  297 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 396  Q
    ||||| |||||||| |||||||||| | ||||||||||||||||||||||||||| | ||| || |||||||| | | | ||||| ||||| ||| ||||    
T  46474459 gctaagatcacccatcaagaggattaagcacctgtccaacaaagatgattgttccggccaaatcatctctaattagatataagaatgggtgatcaactac 46474360  T
Q  397 aaagtctagtcgagttgga 415  Q
    ||| || | ||||||||||    
T  46474359 aaaatccattcgagttgga 46474341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 462 - 657
Target Start/End: Complemental strand, 46539371 - 46539170
Alignment:
Q  462 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaactacataggttttgact------agagttcaccattttagtaag 555  Q
    |||||| ||| |||| ||||||||| ||||||||||||||||| ||||  |  |||  | | |||||||||||      ||||| ||||||||| || |     
T  46539371 cagctttggttccttgttcatttacttcaataaaagacttgtggaatacatcggaaacataaaggttttgacttgtaggagagtccaccatttttgtcaa 46539272  T
Q  556 acctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacct 655  Q
    |||||| |  | ||||||||||||||  ||||||||||| ||||||| ||||||||||||  |||| ||||| ||||| ||||| || || |||||||||    
T  46539271 acctccttgagagaaaggtaaaaccattcctagctccttaagcatattagaagtttcaagctcaaaagaaattttgaatcttggaattctgaagtcacct 46539172  T
Q  656 ac 657  Q
    ||    
T  46539171 ac 46539170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 312 - 404
Target Start/End: Complemental strand, 46532434 - 46532342
Alignment:
Q  312 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 404  Q
    |||||||||||| ||| || ||||||||||  ||||| |||| ||| || ||||| |||| ||||| ||||||||||||||||||||||||||    
T  46532434 caagaggattgagcacttggccaacaaagagtattgtaccagacaaatcgtctcttatcaaaaacatgaaagggtggtcagctacaaagtcta 46532342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 673 - 888
Target Start/End: Original strand, 47397276 - 47397491
Alignment:
Q  673 tggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaat 772  Q
    |||||| ||||||| |||| ||||  ||| ||||||||  ||||||| ||||  || ||  ||||||||||||||||||||||||| |||||| |  ||     
T  47397276 tggaagattgtgttctagtaactcaaatttagaagccatgttctcaaccaaatctgtcaatccatcttttgcatttggaagaaaaatgtacatggagaaa 47397375  T
Q  773 tgacgcttatcttcgcctccccttataaggaaggccaagaactttaaaatcatcg-aagctctaatatattgttcttccttgctagtcatgaagggaacc 871  Q
    || ||||||||||| |||  || |||||| ||| | ||| ||||| ||||||| | || | |||||| |||| || | | || ||||||||||||||||     
T  47397376 tggcgcttatcttcaccttgcc-tataagaaagacgaagtactttgaaatcatggaaaacactaataaattgatccttcatgttagtcatgaagggaact 47397474  T
Q  872 ttaattgagctgccatt 888  Q
    || ||||||||||||||    
T  47397475 ttgattgagctgccatt 47397491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 404
Target Start/End: Complemental strand, 5156781 - 5156674
Alignment:
Q  297 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 396  Q
    ||||| ||||| || |||| ||||||| ||| |||||||||||||  || ||||||||| | | ||||||||| | ||| ||||||||||| ||||||||    
T  5156781 gctaagatcactcatcaagtggattgagcacttgtccaacaaagagaatggttccagtcgagttttctctaattagaaataagaaagggtgatcagctac 5156682  T
Q  397 aaagtcta 404  Q
    ||||||||    
T  5156681 aaagtcta 5156674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 675 - 786
Target Start/End: Complemental strand, 45903109 - 45902998
Alignment:
Q  675 gaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattg 774  Q
    |||||||||| | |||| |||| ||||||||||| | ||||||||  ||| || |||  ||||||||||| |||||||||||||  |||||||  |||||    
T  45903109 gaagcttgtggtgtagtaactcagattcagaagctaccttctcaactaaactttgcaaaccatcttttgcttttggaagaaaaatatacatagagaattg 45903010  T
Q  775 acgcttatcttc 786  Q
    ||||||||||||    
T  45903009 acgcttatcttc 45902998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 404
Target Start/End: Complemental strand, 46545004 - 46544913
Alignment:
Q  313 aagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 404  Q
    |||||||||||  || ||||||| |||||  |  ||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||    
T  46545004 aagaggattgagaacttgtccaataaagagtaccgttccagacaaatcttctctgatcaaaaacaagaaagggtggtcagctacaaagtcta 46544913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 455 - 517
Target Start/End: Complemental strand, 5156629 - 5156567
Alignment:
Q  455 gctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaa 517  Q
    |||||| ||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  5156629 gctgcagcagcttcagtgccttcttcatttacttcaatgaaagatttgtgaaatattttagaa 5156567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 297 - 399
Target Start/End: Complemental strand, 46484576 - 46484474
Alignment:
Q  297 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 396  Q
    ||||| |||||||| ||||| |||| | ||| ||||||||||||||||||||||||| ||| || |||||||| | | | ||||| ||||| ||||||||    
T  46484576 gctaagatcacccatcaagatgattaagcacatgtccaacaaagatgattgttccagccaaatcatctctaattagatataagaatgggtgatcagctac 46484477  T
Q  397 aaa 399  Q
    |||    
T  46484476 aaa 46484474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 403
Target Start/End: Original strand, 46236382 - 46236482
Alignment:
Q  303 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 402  Q
    |||| ||| ||| |||||||| |||||||||| |||||| ||||||||| ||| |  |||||||||| | ||| | ||||||||| ||||||||||||||    
T  46236382 atcatccaacaacaggattgagcacctgtccagcaaagaggattgttccggtcgaaacttctctaattagaaataggaaagggtgatcagctacaaagtc 46236481  T
Q  403 t 403  Q
    |    
T  46236482 t 46236482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 857 - 921
Target Start/End: Complemental strand, 46538958 - 46538894
Alignment:
Q  857 gtcatgaagggaaccttaattgagctgccattcaaaaggtgaaaatcatagtctttcgtttttga 921  Q
    ||||||||||||||||| | |||||||||||| | ||||| ||||||||||||||| ||||||||    
T  46538958 gtcatgaagggaaccttgactgagctgccattaagaaggttaaaatcatagtcttttgtttttga 46538894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 569 - 644
Target Start/End: Original strand, 4581246 - 4581321
Alignment:
Q  569 aaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcc 644  Q
    |||||||||||||| |||||||||||||||| |  ||| ||||||||| |||| ||||||||||| ||||| ||||    
T  4581246 aaaggtaaaaccactcctagctccttcagcacactagacgtttcaagttcaaaagaaatattgaatcttggaatcc 4581321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 347 - 402
Target Start/End: Complemental strand, 46539498 - 46539443
Alignment:
Q  347 gttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 402  Q
    ||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||    
T  46539498 gttccagacaaatcttctctgatcaaaaacaagaaagggtggtcagctacaaagtc 46539443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 556 - 767
Target Start/End: Original strand, 46554035 - 46554246
Alignment:
Q  556 acctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacct 655  Q
    ||||||||| | ||||||||||| ||| || | |||||||||||||| ||||  |||||  ||||| ||||| | ||| ||||| ||||||||||||||     
T  46554035 acctccattagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaaacccaaaagaaatttcgaaacttggaatcctaaagtcaccc 46554134  T
Q  656 acccccactctatcatatggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaa 755  Q
    ||  | ||| ||  ||  |||||  ||||||  || | |||  |||| |||||||  ||||||| ||||| || || ||||||||||||||  ||||| |    
T  46554135 acatcaactatactatcaggaagtatgtgttccagggtctcatattccgaagccactttctcaatcaaagctgacaacccatcttttgcatcgggaagta 46554234  T
Q  756 aaaagtacatag 767  Q
    ||||||||||||    
T  46554235 aaaagtacatag 46554246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 329 - 401
Target Start/End: Original strand, 46526031 - 46526103
Alignment:
Q  329 tgtccaacaaagatgatt-gttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 401  Q
    ||||||||||||| |||| ||||||||||| ||||||||||| | |||||||||| ||||||| ||||||||||    
T  46526031 tgtccaacaaagaggatttgttccagtcaaatcttctctaattagaaacaagaaa-ggtggtctgctacaaagt 46526103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 303 - 404
Target Start/End: Complemental strand, 46535471 - 46535370
Alignment:
Q  303 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 402  Q
    |||| ||||||||||||||   ||| || |||||||||   ||||| ||||  || |||||||| |||| |||||||||||| |||||||||||||||||    
T  46535471 atcatccagcaagaggattatgcacttgcccaacaaagtgtattgtaccagataaatcttctcttatcaaaaacaagaaaggatggtcagctacaaagtc 46535372  T
Q  403 ta 404  Q
    ||    
T  46535371 ta 46535370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 568 - 657
Target Start/End: Complemental strand, 46544734 - 46544645
Alignment:
Q  568 gaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctac 657  Q
    ||||||||||||||| ||||||||||||||||   ||||||||||||| ||||| | |||||||||  | || || || |||||||||||    
T  46544734 gaaaggtaaaaccactcctagctccttcagcacgccagaagtttcaagcccaaaagcaatattgaatttcggaattcttaagtcacctac 46544645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 569 - 632
Target Start/End: Original strand, 4613703 - 4613766
Alignment:
Q  569 aaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattga 632  Q
    |||||||||||||| ||||||||||||||||||  ||| ||||||||  |||| ||||||||||    
T  4613703 aaaggtaaaaccactcctagctccttcagcatactagacgtttcaagctcaaaagaaatattga 4613766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 335 - 410
Target Start/End: Complemental strand, 16025976 - 16025901
Alignment:
Q  335 acaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctagtcgag 410  Q
    ||||||| ||||||| | || || ||||||||||| | ||| ||||||||||||||||||||||| |||| |||||    
T  16025976 acaaagaggattgtttcggttaaatcttctctaattagaaataagaaagggtggtcagctacaaaatctactcgag 16025901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 303 - 401
Target Start/End: Original strand, 46548602 - 46548700
Alignment:
Q  303 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 401  Q
    |||||||| ||| |||||||| ||| ||||||| |||||  || |||||||   | |||||| | |||||||||| |||||| ||||||||||||||||    
T  46548602 atcacccaacaaaaggattgagcacttgtccaataaagagtatagttccagaagaatcttctttgatcataaacatgaaaggatggtcagctacaaagt 46548700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 535 - 633
Target Start/End: Complemental strand, 51944185 - 51944087
Alignment:
Q  535 agagttcaccattttagtaagacctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaa 633  Q
    ||||| ||||||||| |||| |||||||   | ||||||||||||||| ||||||| ||| ||||||  || || ||||||  ||||||||||||||||    
T  51944185 agagtccaccatttttgtaaaacctccaggtgagaaaggtaaaaccactcctagcttctttagcatacgagtagcttcaagctcaaatgaaatattgaa 51944087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 456 - 513
Target Start/End: Original strand, 46526167 - 46526224
Alignment:
Q  456 ctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatatttt 513  Q
    ||||| |||||||||||||| | |||||||| ||||| | ||||||||||||||||||    
T  46526167 ctgcagcagcttcggtgcctccctcatttacttcaatgagagacttgtgaaatatttt 46526224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 462 - 510
Target Start/End: Original strand, 4581139 - 4581187
Alignment:
Q  462 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 510  Q
    ||||||| || ||| |||||||||| |||||||||||||||||||||||    
T  4581139 cagcttcagtacctgcttcatttacttcaataaaagacttgtgaaatat 4581187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 462 - 510
Target Start/End: Original strand, 4613596 - 4613644
Alignment:
Q  462 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 510  Q
    ||||||| || ||| |||||||||| |||||||||||||||||||||||    
T  4613596 cagcttcagtacctgcttcatttacttcaataaaagacttgtgaaatat 4613644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 46498760 - 46498700
Alignment:
Q  103 ttgttaaagaaattaaaggaagcctaccaaaatttattaaaatacacaagtatgaactctt 163  Q
    ||||||||||||||| |||||| ||  ||||| ||||||| |||||||| |||||||||||    
T  46498760 ttgttaaagaaattagaggaagtctgtcaaaaattattaacatacacaattatgaactctt 46498700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 473 - 517
Target Start/End: Original strand, 46548765 - 46548809
Alignment:
Q  473 ccttcttcatttacgtcaataaaagacttgtgaaatattttagaa 517  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||||    
T  46548765 ccttcttcttttacttcaatgaaagacttgtgaaatattttagaa 46548809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 734 - 785
Target Start/End: Original strand, 46549016 - 46549067
Alignment:
Q  734 ccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatctt 785  Q
    |||||||||| |||||||||||||||||||||||  ||||| || |||||||    
T  46549016 ccatcttttgtatttggaagaaaaaagtacatagagaattgtcgtttatctt 46549067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 615
Target Start/End: Original strand, 47397171 - 47397218
Alignment:
Q  568 gaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaag 615  Q
    ||||||||||| ||| |||| |||||||| ||||||||||||||||||    
T  47397171 gaaaggtaaaatcactcctaactccttcaacatatcagaagtttcaag 47397218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 4581015 - 4581072
Alignment:
Q  347 gttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 404  Q
    ||||||| ||| |||||||  |||| ||||||||||||||||||||| ||||| ||||    
T  4581015 gttccagacaaatcttctcggatcaaaaacaagaaagggtggtcagccacaaattcta 4581072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 465 - 510
Target Start/End: Original strand, 46236545 - 46236590
Alignment:
Q  465 cttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 510  Q
    |||| ||||||||||||||||| ||||| ||||| |||||||||||    
T  46236545 cttcagtgccttcttcatttacttcaatgaaagatttgtgaaatat 46236590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 852 - 921
Target Start/End: Complemental strand, 46544435 - 46544366
Alignment:
Q  852 tgctagtcatgaagggaaccttaattgagctgccattcaaaaggtgaaaatcatagtctttcgtttttga 921  Q
    |||| |||||||| |||||||| | |  ||||||||| | ||||| ||||||||||||||| ||||||||    
T  46544435 tgcttgtcatgaaaggaaccttgacttggctgccattgagaaggttaaaatcatagtcttttgtttttga 46544366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 852 - 917
Target Start/End: Original strand, 46554334 - 46554399
Alignment:
Q  852 tgctagtcatgaagggaaccttaattgagctgccattcaaaaggtgaaaatcatagtctttcgttt 917  Q
    |||| ||| ||||||||||||| | |||||| ||||  | ||||||||||||||||||||| ||||    
T  46554334 tgctggtcttgaagggaaccttgaatgagctaccatcaagaaggtgaaaatcatagtcttttgttt 46554399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 3e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 568 - 906
Target Start/End: Complemental strand, 35155680 - 35155342
Alignment:
Q  568 gaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctacccccactcta 667  Q
    ||||||||||| ||| ||||| || |||||||||| ||||| ||||||   | ||||||  ||||| ||||| ||  | ||| ||||||| | | || |     
T  35155680 gaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagcttagatgaaaatttgaatcttggaattttgaagccacctactcgcgctgtt 35155581  T
Q  668 tcatatggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatag 767  Q
    | ||| ||||||||||| | |||  ||||  |||||||||||| |||||||| ||||| ||  || ||||||||||||||||||||||||| ||||||||    
T  35155580 ttataaggaagcttgtgctctagcaactcaaattcagaagccaccttctcaaccaaagctgatagtccatcttttgcatttggaagaaaaatgtacatag 35155481  T
Q  768 taaattgacgcttatcttcgcctccccttataaggaaggccaagaactttaaaatcatc-gaagctctaatatattgttcttccttgctagtcatgaagg 866  Q
      ||||  |||| |||||  |||   |||||| ||||| | ||||||||||||| ||||  ||||||||||| |||| ||     |||| ||||||||||    
T  35155480 agaatttccgctcatcttttcct-tgcttatacggaagacgaagaactttaaaaccatcaaaagctctaataaattgatcaaggctgctggtcatgaagg 35155382  T
Q  867 gaaccttaattgagctgccattcaaaaggtgaaaatcata 906  Q
    ||||||| | |||||||||||||| |||||||||||||||    
T  35155381 gaaccttgactgagctgccattcagaaggtgaaaatcata 35155342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 453 - 908
Target Start/End: Complemental strand, 35162821 - 35162361
Alignment:
Q  453 tggctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaa-ctacataggttttgacta------gagttcacca 545  Q
    |||||||| ||||| |||||||||  |||||||| ||||| ||||||||||||||||| || ||| ||| | ||||||||||        |||| |||||    
T  35162821 tggctgcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaactaaa-aggttttgaccttcaagtgagtccacca 35162723  T
Q  546 ttttagtaagacctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcct 645  Q
    |||| || | |||||||   | ||||||||||| ||| ||||| |||||||||| |  |||||||||||| ||| ||||||  |||||  |||| ||  |    
T  35162722 tttttgtcaaacctccagaagagaaaggtaaaatcactcctagatccttcagcacacgagaagtttcaagcccatatgaaaatttgaattttggaatttt 35162623  T
Q  646 aaagtcacctacccccactctatcatatggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgca 745  Q
     ||| |||||||   |||||||| | | |||||| |||  | |||   |||  | |||||||||| |||||||| ||||| || ||| ||||||||||||    
T  35162622 gaagccacctactggcactctattacaaggaagcatgttctctaggagctcaaaatcagaagccaccttctcaaccaaagctgacaggccatcttttgca 35162523  T
Q  746 tttggaagaaaaaagtacatagtaaattgacgcttatcttcgcctccccttataaggaaggccaagaactttaaaatcatcgaa-gctctaatatattgt 844  Q
    ||||||||||||  ||||||||  ||||  |||| |||||  |||  | ||||||||||| | ||||||||||||| |||| || ||||||||| | ||     
T  35162522 tttggaagaaaat-gtacatagagaatttccgctcatcttttccttgc-ttataaggaagacgaagaactttaaaaccatcaaaagctctaataaactga 35162425  T
Q  845 tcttccttgctagtcatgaagggaaccttaattgagctgccattcaaaaggtgaaaatcatagt 908  Q
    ||    ||| ||||||||||||||||||| | |||||| ||||||| |||||||||||||||||    
T  35162424 tcaaggttggtagtcatgaagggaaccttgactgagcttccattcagaaggtgaaaatcatagt 35162361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 306 - 410
Target Start/End: Complemental strand, 15556536 - 15556432
Alignment:
Q  306 acccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctag 405  Q
    ||||||||| |||||| | ||||||||||||||||| |||||| || ||||| |||||||| || | ||| ||||| |||||||||||||||||||||||    
T  15556536 acccagcaaaaggattaagcacctgtccaacaaagaggattgtgccggtcaaatcttctcttattagaaataagaatgggtggtcagctacaaagtctag 15556437  T
Q  406 tcgag 410  Q
    |||||    
T  15556436 tcgag 15556432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 568 - 654
Target Start/End: Complemental strand, 15556274 - 15556188
Alignment:
Q  568 gaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacc 654  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||  |||||||| ||||||||| |||| || || ||||||||    
T  15556274 gaaaggtaaaaccactcctaggtccttcagcatatcagaagtttcaaacccaaatgagatattgaactttggaattctgaagtcacc 15556188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 407
Target Start/End: Complemental strand, 35155929 - 35155835
Alignment:
Q  313 aagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctagtc 407  Q
    |||||| |||||||| |||||  |||||| |||||||   ||||| ||||||||||| | ||| ||||||||||| ||||||| |||||||||||    
T  35155929 aagagggttgaacacttgtccggcaaagaggattgtttgggtcaaatcttctctaattaaaaataagaaagggtgatcagctataaagtctagtc 35155835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 835 - 918
Target Start/End: Complemental strand, 15556007 - 15555924
Alignment:
Q  835 aatatattgttcttccttgctagtcatgaagggaaccttaattgagctgccattcaaaaggtgaaaatcatagtctttcgtttt 918  Q
    ||||||||| || || |||||  |||| || |||||||| | |||||| ||||| | |||||||||||||||||||||||||||    
T  15556007 aatatattgatcctctttgctgctcataaacggaaccttgagtgagctaccattgagaaggtgaaaatcatagtctttcgtttt 15555924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 453 - 510
Target Start/End: Complemental strand, 35155801 - 35155744
Alignment:
Q  453 tggctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 510  Q
    |||||||||||||||  ||||||| ||| ||||| ||||||||| |||| ||||||||    
T  35155801 tggctgcaacagctttagtgcctttttcgtttacttcaataaaacacttctgaaatat 35155744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 464 - 654
Target Start/End: Original strand, 21463943 - 21464139
Alignment:
Q  464 gcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaactacataggttttga------ctagagttcaccattttagtaagac 557  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||||| || ||   | | |||||||||      | ||||| ||||||||| || | |     
T  21463943 gcttcggtaccttcttcgtttacttcaataaaagacttgtgaaatatgttggacacataaaggttttgagcaattcgagagtccaccatttttgtcaaag 21464042  T
Q  558 ctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacc 654  Q
    |||| |  | |||||||||||||||||||||||| |||||||||||||||  |||||| ||||| ||||| |||||  | || ||||| ||||||||    
T  21464043 ctccttcagagaaaggtaaaaccacgcctagctctttcagcatatcagaacattcaagcccaaaagaaatcttgaatttcggaatcctgaagtcacc 21464139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 462 - 906
Target Start/End: Original strand, 9692469 - 9692919
Alignment:
Q  462 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaactacataggttttgact------agagttcaccattttagtaag 555  Q
    ||||||| |||||||| || ||||| ||||| ||||||||||||||||| || |||  | | |||| |||||       ||||| ||||||||| || |     
T  9692469 cagcttcagtgccttcctcgtttacttcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttttgtcaa 9692568  T
Q  556 acctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacct 655  Q
    |||||||   | ||||||||||  ||| |||| |||||||  ||||  |||||||||||| ||||||||||  ||||| ||||| ||    || ||||||    
T  9692569 acctccagaagagaaaggtaaactcactcctaactccttcgtcatacgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcacct 9692668  T
Q  656 acccccactctatcatatggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaa 755  Q
    |  | ||||   | ||| ||||||||||| | |||  ||||  ||||||||||||  ||||||| || || |   ||  |||||||||||||||||||||    
T  9692669 attctcactagtttataaggaagcttgtgctctaggaactcaaattcagaagccactttctcaaccatagctaatagtacatcttttgcatttggaagaa 9692768  T
Q  756 aaaagtacatagtaaattgacgcttatcttcgcctccccttataaggaaggccaagaactttaaaatcatc-gaagctctaatatattgttcttccttgc 854  Q
    ||| ||||||||  ||||| ||||||| ||  |||    ||||||||||| | ||||||||||||| ||||  ||||||||||| | || ||    ||||    
T  9692769 aaatgtacatagagaattgtcgcttattttttcct-taattataaggaagacgaagaactttaaaaccatcaaaagctctaataaactgatcaaggttgc 9692867  T
Q  855 tagtcatgaagggaaccttaattgagctgccattcaaaaggtgaaaatcata 906  Q
    |  |||| || |||||||| | |||||||||||||  |||||||||||||||    
T  9692868 tgctcataaaaggaaccttgactgagctgccattcggaaggtgaaaatcata 9692919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 535 - 908
Target Start/End: Original strand, 9675526 - 9675899
Alignment:
Q  535 agagttcaccattttagtaagacctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaac 634  Q
    ||||| ||||||||| || | |||||||   | ||||||||||| ||| ||||||||||||| |||   |||||||||||| ||||||||||  |||||     
T  9675526 agagtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaat 9675625  T
Q  635 cttgggatcctaaagtcacctacccccactctatcatatggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcc 734  Q
    ||||| ||    || | ||||||   |||||  | ||| ||||||||| | | |||  ||||  |||||||||||| ||| |||| || ||  |  || |    
T  9675626 cttggaatttggaaattacctactttcactcgtttataaggaagcttgggctctaggaactcaaattcagaagccaccttttcaaccatagccgatagtc 9675725  T
Q  735 catcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgcctccccttataaggaaggccaagaactttaaaatcatc-gaagctc 833  Q
    || ||||||||||||||||||||| ||||||||  ||||| ||||||||| | |||   || |||||| || | ||| ||||||||| ||||  ||||||    
T  9675726 caccttttgcatttggaagaaaaatgtacatagagaattgtcgcttatctccacct-tgctcataagggagacaaagcactttaaaaccatcaaaagctc 9675824  T
Q  834 taatatattgttcttccttgctagtcatgaagggaaccttaattgagctgccattcaaaaggtgaaaatcatagt 908  Q
    ||||| | || ||    ||| |  |||| |||||||| || | |||||||||||||| |||||||||||||||||    
T  9675825 taataaactgatcaaggttggtgctcataaagggaactttgactgagctgccattcagaaggtgaaaatcatagt 9675899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 303 - 414
Target Start/End: Original strand, 9675300 - 9675411
Alignment:
Q  303 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 402  Q
    |||||||| ||||||||||||  ||||||||  ||||||||||||||   ||| | ||||||||||| | ||| | ||||||||| || |||| ||||||    
T  9675300 atcacccaacaagaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttctctaattagaaataggaaagggtgatcggctataaagtc 9675399  T
Q  403 tagtcgagttgg 414  Q
    || || ||||||    
T  9675400 tattccagttgg 9675411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 303 - 414
Target Start/End: Original strand, 9692322 - 9692433
Alignment:
Q  303 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 402  Q
    |||||||| ||||||||||||  ||||||||  |||||||||| |||   ||||| ||||||||||| | ||| | ||||||||| || |||| ||||||    
T  9692322 atcacccaacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcaaatcttctctaattagaaataggaaagggtgatcggctataaagtc 9692421  T
Q  403 tagtcgagttgg 414  Q
    || || ||||||    
T  9692422 tattccagttgg 9692433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 21463785 - 21463874
Alignment:
Q  312 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 401  Q
    |||||||||||| ||| || |||| |||||  || ||||| | ||| |||||||| |||| ||||||||||||||| |||||||| ||||    
T  21463785 caagaggattgagcacttgcccaataaagagtatggttccggacaaatcttctctgatcaaaaacaagaaagggtgatcagctacgaagt 21463874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 3e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 300 - 402
Target Start/End: Complemental strand, 17737052 - 17736950
Alignment:
Q  300 aaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaa 399  Q
    ||||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || ||||||||||||||||||||    
T  17737052 aaaatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaa 17736953  T
Q  400 gtc 402  Q
    |||    
T  17736952 gtc 17736950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 302 - 402
Target Start/End: Complemental strand, 17718637 - 17718537
Alignment:
Q  302 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 401  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || ||||||||||||||||||||||    
T  17718637 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagt 17718538  T
Q  402 c 402  Q
    |    
T  17718537 c 17718537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 312 - 402
Target Start/End: Complemental strand, 17699694 - 17699604
Alignment:
Q  312 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 402  Q
    |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||||||||||||    
T  17699694 caagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagtc 17699604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 402
Target Start/End: Complemental strand, 17708813 - 17708713
Alignment:
Q  302 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 401  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||| |||||||    
T  17708813 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagt 17708714  T
Q  402 c 402  Q
    |    
T  17708713 c 17708713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 402
Target Start/End: Complemental strand, 17736467 - 17736367
Alignment:
Q  302 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 401  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||| |||||||    
T  17736467 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagt 17736368  T
Q  402 c 402  Q
    |    
T  17736367 c 17736367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 402
Target Start/End: Complemental strand, 16722680 - 16722590
Alignment:
Q  312 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 402  Q
    |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||| ||||||||    
T  16722680 caagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagtc 16722590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 302 - 393
Target Start/End: Complemental strand, 16730679 - 16730588
Alignment:
Q  302 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagc 393  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || ||||||||||||||    
T  16730679 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagc 16730588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 798 - 921
Target Start/End: Complemental strand, 17708306 - 17708182
Alignment:
Q  798 taaggaaggccaagaactttaaaatcatcgaa-gctctaatatattgttcttccttgctagtcatgaagggaaccttaattgagctgccattcaaaaggt 896  Q
    |||||||| ||||||||||||||| |||| || |  || ||| | || || | |||||| ||||| ||||||||||| | |||  ||||||| | |||||    
T  17708306 taaggaagaccaagaactttaaaaccatcaaaagaactgataaactgatcattcttgctggtcataaagggaacctttactgacttgccattgagaaggt 17708207  T
Q  897 gaaaatcatagtctttcgtttttga 921  Q
     |||||||||||| |||||||||||    
T  17708206 caaaatcatagtccttcgtttttga 17708182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 798 - 921
Target Start/End: Complemental strand, 17718130 - 17718006
Alignment:
Q  798 taaggaaggccaagaactttaaaatcatcgaa-gctctaatatattgttcttccttgctagtcatgaagggaaccttaattgagctgccattcaaaaggt 896  Q
    |||||||| ||||||||||||||| |||| || |  || ||| | || || | |||||| ||||| ||||||||||| | |||  ||||||| | |||||    
T  17718130 taaggaagaccaagaactttaaaaccatcaaaagaactgataaactgatcattcttgctggtcataaagggaacctttactgacttgccattgagaaggt 17718031  T
Q  897 gaaaatcatagtctttcgtttttga 921  Q
     |||||||||||| |||||||||||    
T  17718030 caaaatcatagtccttcgtttttga 17718006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 850 - 921
Target Start/End: Complemental strand, 17735907 - 17735836
Alignment:
Q  850 cttgctagtcatgaagggaaccttaattgagctgccattcaaaaggtgaaaatcatagtctttcgtttttga 921  Q
    |||||| ||||| ||||||||||| | |||  ||||||| | ||||| |||||||||||| |||||||||||    
T  17735907 cttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttga 17735836  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 406
Target Start/End: Original strand, 20168618 - 20168721
Alignment:
Q  303 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 402  Q
    ||||| || |||||||||||| ||| || || ||||||| ||||||||| ||||| ||||| ||||| | ||| ||||| ||||||| | || ||||||     
T  20168618 atcactcatcaagaggattgagcacttgcccgacaaagaggattgttcccgtcaaatcttccctaattagaaataagaaggggtggttaacttcaaagtt 20168717  T
Q  403 tagt 406  Q
    ||||    
T  20168718 tagt 20168721  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 406
Target Start/End: Complemental strand, 20359666 - 20359563
Alignment:
Q  303 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 402  Q
    ||||| || |||||||||||| ||| || || ||||||| ||||||||| ||||| ||||| ||||| | ||| ||||| ||||||| | || ||||||     
T  20359666 atcactcatcaagaggattgagcacttgcccgacaaagaggattgttcccgtcaaatcttccctaattagaaataagaaggggtggttaacttcaaagtt 20359567  T
Q  403 tagt 406  Q
    ||||    
T  20359566 tagt 20359563  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 572 - 657
Target Start/End: Complemental strand, 20144887 - 20144802
Alignment:
Q  572 ggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctac 657  Q
    ||||||||||| |||| |||||| ||  |||||  ||||||||| |||||||||| |||||| ||||| ||  |||| ||||||||    
T  20144887 ggtaaaaccactcctaactcctttagggtatcactagtttcaagcccaaatgaaacattgaatcttggaattttaaattcacctac 20144802  T

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