View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3227R-Insertion-2 (Length: 930)

Name: NF3227R-Insertion-2
Description: NF3227R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3227R-Insertion-2
NF3227R-Insertion-2
[»] chr2 (8 HSPs)
chr2 (326-919)||(40844986-40845574)
chr2 (326-779)||(40840724-40841172)
chr2 (8-178)||(40845753-40845923)
chr2 (336-546)||(40851830-40852040)
chr2 (8-136)||(40841240-40841368)
chr2 (12-160)||(40852542-40852690)
chr2 (635-779)||(40851165-40851306)
chr2 (225-325)||(40845602-40845706)
[»] chr4 (5 HSPs)
chr4 (367-476)||(21114572-21114684)
chr4 (663-767)||(21149972-21150073)
chr4 (634-676)||(21145028-21145070)
chr4 (634-689)||(21114899-21114954)
chr4 (634-676)||(21124938-21124980)
[»] chr1 (1 HSPs)
chr1 (367-479)||(19577598-19577713)


Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 326 - 919
Target Start/End: Complemental strand, 40845574 - 40844986
Alignment:
Q  326 catggatatatttccattgaacaatttgttatgtcaattgcaggatgttctattttttctttgaatctcgaaacagtaaggatgaccctgtcgtcgtatg 425  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  40845574 catggacatatttccattgaacaatttgttatgccaattgcaggatgttctattttttctttgaatctcgaaacagtaaggatgaccctgtcatcatatg 40845475  T
Q  426 gttaaccggaggtcctggatgcggcagtgaaattgccttgttttatgaaaatggaccatttcagttctcaaaggacaagaacttgtcccttgtttggaat 525  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40845474 gttaaccggaggtcctggatgcggtagtgaaattgccttgttttatgaaaatggaccatttcagttctcaaaggacaagaacttgtcccttgtttggaat 40845375  T
Q  526 gaatatggatgggacaaggtagcagctattcattcttcccttttctttattccactttagttctcactgataaataatcatcttgcaatatatacttttt 625  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  40845374 gaatatggatgggacaaggtagctgctattcattattcccttttcttttttccactttagttctcactgatacataatcatcttgcaacatatacttttt 40845275  T
Q  626 tctttctcttttgtaggcatcaaatattatatttgtagaccaacccattggatcaggtttcagctacaccaccgatgttagtgatgatattcgccatgat 725  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40845274 tctttctcttttgtaggcatcaaatattatatttgtagaccaacccattggatcaggtttcagctacaccaccgatgttagtgatgatattcgccatgat 40845175  T
Q  726 gaagacagtattagcaacgatttgtatgacttcttgcaggtaacttgatttgttcagtaccttattaatttgatttaatcacttgaattaagtggttaaa 825  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  40845174 gaagacagtattagcaacgatttgtatgacttcttgcaggtaacttgatttgttcagtaccttattaa-ttga-ttaatcacttgaattaagtggttaaa 40845077  T
Q  826 cnnnnnnnnataacgagaaattaagtggttaaacttgattcatagttagttagtagtacttatatttaaattttaaaattcaaaggacgacatt 919  Q
    |        |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  40845076 c-tttttttataacgagaaattaagtggttaaacttgattcatcgttagttagtagtacttatattt-aattttaaaattcaaa-gacgacatt 40844986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 326 - 779
Target Start/End: Complemental strand, 40841172 - 40840724
Alignment:
Q  326 catggatatatttccattgaacaatttgttatgtcaattgcaggatgttctattttttctttgaatctcgaaacagtaaggatgaccctgtcgtcgtatg 425  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40841172 catggacatatttccattgaacaatttgttatgccaattgcaggatgttctattttttctttgaatctcgaaacagtaaggatgaccctgtcgtcatatg 40841073  T
Q  426 gttaaccggaggtcctggatgcggcagtgaaattgccttgttttatgaaaatggaccatttcagttctcaaaggacaagaacttgtcccttgtttggaat 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40841072 gttaaccggaggtcctggatgcggcagtgaaattgccttgttttatgaaaatggaccatttcagttctcaaaggacaagaacttgtcccttgtttggaat 40840973  T
Q  526 gaatatggatgggacaaggtagcagctattcattcttcccttttctttattccactttagttctcactgataaataatcatcttgcaatatatacttttt 625  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40840972 gaatatggatgggacaaggtagctgctattcactattcccttttctcttttccactttagttctcactgatacataatcatcttgcaatatatacttttt 40840873  T
Q  626 tctttctcttttgtaggcatcaaatattatatttgtagaccaacccattggatcaggtttcagctacaccaccgatgttagtgatgatattcgccatgat 725  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||  |   ||| ||||||    
T  40840872 tctttctcttttgtaggcatcaaatattatatttgtagaccaacccattggatcaggtttcagctataccactgatgatagtgacta---tcgacatgat 40840776  T
Q  726 gaagacagtattagcaacgatttgtatgacttcttgcaggtaacttgatttgtt 779  Q
    |||||| || ||||||| ||| | |||   ||||||||||||||||||||||||    
T  40840775 gaagacggtgttagcaatgatctatat--tttcttgcaggtaacttgatttgtt 40840724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 40845923 - 40845753
Alignment:
Q  8 acataccagagaatgatcctcatgtcctccatggaaacattgtggagaagaagttcactttccctggttttgatgactctggttattctgttgaagaact 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40845923 acataccagagaatgatcctcatgtcctccatggaaacattgtggagaagaagttcactttccccggttttgatgactctggttattctgttgaagaact 40845824  T
Q  108 tggtcatcatgcagggtattatagtcttcctcattccaaagctgctaggtaaatgttttatgtcgtgtgtg 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40845823 tggtcatcatgcagggtattatagtcttcctcattccaaagctgctaggtaaatgttttatgttgtgtgtg 40845753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 336 - 546
Target Start/End: Complemental strand, 40852040 - 40851830
Alignment:
Q  336 tttccattgaacaatttgttatgtcaattgcaggatgttctattttttctttgaatctcgaaacagtaaggatgaccctgtcgtcgtatggttaaccgga 435  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||  |||||||||| |||    
T  40852040 tttccattgaacaatttgttatgtcgattgcaggatgttctattttttctttgaatctcgaaacactaaggatgaccctgttgttatatggttaactgga 40851941  T
Q  436 ggtcctggatgcggcagtgaaattgccttgttttatgaaaatggaccatttcagttctcaaaggacaagaacttgtcccttgtttggaatgaatatggat 535  Q
    || || |||||| |||||||||||||  |||| ||||||||||| || ||| | || || ||||| ||||||||||||||||||||||||||||||||||    
T  40851940 gggccaggatgcagcagtgaaattgctatgttctatgaaaatggtccttttaaattttccaaggataagaacttgtcccttgtttggaatgaatatggat 40851841  T
Q  536 gggacaaggta 546  Q
    |||||| ||||    
T  40851840 gggacatggta 40851830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 40841368 - 40841240
Alignment:
Q  8 acataccagagaatgatcctcatgtcctccatggaaacattgtggagaagaagttcactttccctggttttgatgactctggttattctgttgaagaact 107  Q
    ||||||||||||||||||||| ||||||| || |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40841368 acataccagagaatgatcctcttgtcctctatcgaaacattgtggagaaaaagttcactttccctggttttgatgaccctggttattctgttgaagaact 40841269  T
Q  108 tggtcatcatgcagggtattatagtcttc 136  Q
    |||||||||||||||||||||||||||||    
T  40841268 tggtcatcatgcagggtattatagtcttc 40841240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 40852690 - 40852542
Alignment:
Q  12 accagagaatgatcctcatgtcctccatggaaacattgtggagaagaagttcactttccctggttttgatgactctggttattctgttgaagaacttggt 111  Q
    ||||||||||||||||||| | || |||||||| ||| |||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  40852690 accagagaatgatcctcattttcttcatggaaatattatggagaagaagttcactttccctggttttgttgactctggtgcttctgttgaagaacttggt 40852591  T
Q  112 catcatgcagggtattatagtcttcctcattccaaagctgctaggtaaa 160  Q
    ||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  40852590 catcatgcaggctattatcgtcttcctcattccaaagctgcaaggtaaa 40852542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 635 - 779
Target Start/End: Complemental strand, 40851306 - 40851165
Alignment:
Q  635 tttgtaggcatcaaatattatatttgtagaccaacccattggatcaggtttcagctacaccaccgatgttagtgatgatattcgccatgatgaagacagt 734  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||| |||||| |   |||| |||||||||||| ||    
T  40851306 tttgtaggcatcaaatattatatttgtagaccaacccactggaacaggtttcagctataccactgatgatagtgacg---ttcgacatgatgaagacggt 40851210  T
Q  735 attagcaacgatttgtatgacttcttgcaggtaacttgatttgtt 779  Q
     ||||||| ||| | ||||| ||||||||||||||||||| ||||    
T  40851209 gttagcaatgatctatatgatttcttgcaggtaacttgatctgtt 40851165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 225 - 325
Target Start/End: Complemental strand, 40845706 - 40845602
Alignment:
Q  225 aaagttcaagattattaataaattcctctnnnnnnnnggttattaatcaatgttttttattttaaaagtggaca----gacactaatccgcttttctgta 320  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    |||||||||  |||||||||||    
T  40845706 aaagttcaagattattaataaattcctctaaaaaaaaggttattaatcaatgttttttattttaaaagtggacagacagacactaatatgcttttctgta 40845607  T
Q  321 tatta 325  Q
    |||||    
T  40845606 tatta 40845602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 367 - 476
Target Start/End: Original strand, 21114572 - 21114684
Alignment:
Q  367 aggatgttctattttttctttgaatctcgaaacagt---aaggatgaccctgtcgtcgtatggttaaccggaggtcctggatgcggcagtgaaattgcct 463  Q
    |||||||||||||||||||||||||| ||| ||| |   ||||||||||| || ||  ||||||| || |||||||| || |||||||||||| | || |    
T  21114572 aggatgttctattttttctttgaatcacgagacactcctaaggatgacccagttgtgatatggttgactggaggtccaggttgcggcagtgaactagctt 21114671  T
Q  464 tgttttatgaaaa 476  Q
    |||||||||||||    
T  21114672 tgttttatgaaaa 21114684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 663 - 767
Target Start/End: Original strand, 21149972 - 21150073
Alignment:
Q  663 gaccaacccattggatcaggtttcagctacaccaccgatgttagtgatgatattcgccatgatgaagacagtattagcaacgatttgtatgacttcttgc 762  Q
    ||||||||||||||  ||||||||||||||||  | |||| |||||||   ||||| |||||| ||   |||||||||||||| ||||| ||||||||||    
T  21149972 gaccaacccattgggacaggtttcagctacacttctgatgatagtgat---attcgacatgatcaaactagtattagcaacgacttgtacgacttcttgc 21150068  T
Q  763 aggta 767  Q
    |||||    
T  21150069 aggta 21150073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 634 - 676
Target Start/End: Original strand, 21145028 - 21145070
Alignment:
Q  634 ttttgtaggcatcaaatattatatttgtagaccaacccattgg 676  Q
    |||||||||||||||||||| ||||||| ||||||||||||||    
T  21145028 ttttgtaggcatcaaatattctatttgttgaccaacccattgg 21145070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 689
Target Start/End: Original strand, 21114899 - 21114954
Alignment:
Q  634 ttttgtaggcatcaaatattatatttgtagaccaacccattggatcaggtttcagc 689  Q
    |||||||||||||||||||| | ||||| || |||||||||||  |||||||||||    
T  21114899 ttttgtaggcatcaaatattctttttgttgatcaacccattgggacaggtttcagc 21114954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 634 - 676
Target Start/End: Original strand, 21124938 - 21124980
Alignment:
Q  634 ttttgtaggcatcaaatattatatttgtagaccaacccattgg 676  Q
    |||||||||||||||||||| | ||||| ||||||||||||||    
T  21124938 ttttgtaggcatcaaatattctttttgttgaccaacccattgg 21124980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 367 - 479
Target Start/End: Complemental strand, 19577713 - 19577598
Alignment:
Q  367 aggatgttctattttttctttgaatctcgaaacagtaagga---tgaccctgtcgtcgtatggttaaccggaggtcctggatgcggcagtgaaattgcct 463  Q
    ||||||||||| |||||||||||||| || |||  ||||||   ||||||||| ||| | ||||| || ||||| ||||| ||  |||||||| | || |    
T  19577713 aggatgttctactttttctttgaatcacgcaaccataaggaagatgaccctgttgtcatttggttgactggaggacctggctgtagcagtgaattggctt 19577614  T
Q  464 tgttttatgaaaatgg 479  Q
    ||||||| ||||||||    
T  19577613 tgttttacgaaaatgg 19577598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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