View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3227R-Insertion-4 (Length: 690)

Name: NF3227R-Insertion-4
Description: NF3227R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3227R-Insertion-4
NF3227R-Insertion-4
[»] chr5 (26 HSPs)
chr5 (9-586)||(30244698-30245275)
chr5 (57-303)||(30679505-30679751)
chr5 (74-303)||(30057504-30057735)
chr5 (309-488)||(30679289-30679468)
chr5 (98-303)||(30715670-30715877)
chr5 (302-586)||(30747198-30747463)
chr5 (342-578)||(29850747-29850971)
chr5 (302-525)||(30715436-30715641)
chr5 (148-291)||(30747012-30747157)
chr5 (309-458)||(29869551-29869708)
chr5 (312-524)||(30057775-30057969)
chr5 (620-690)||(30244595-30244665)
chr5 (155-257)||(29850623-29850727)
chr5 (624-688)||(29851025-29851089)
chr5 (159-257)||(29869375-29869475)
chr5 (479-586)||(30398066-30398177)
chr5 (624-688)||(30398223-30398287)
chr5 (9-99)||(30204550-30204647)
chr5 (631-686)||(30433559-30433614)
chr5 (635-688)||(30715314-30715367)
chr5 (630-686)||(30058047-30058103)
chr5 (624-686)||(30747490-30747553)
chr5 (541-586)||(30057972-30058017)
chr5 (9-61)||(29849647-29849699)
chr5 (538-586)||(29869775-29869823)
chr5 (624-664)||(29869869-29869909)
[»] chr4 (2 HSPs)
chr4 (12-253)||(20300405-20300648)
chr4 (461-586)||(20298807-20298932)
[»] chr1 (3 HSPs)
chr1 (387-501)||(596712-596826)
chr1 (625-688)||(596499-596562)
chr1 (217-302)||(597111-597195)


Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 9 - 586
Target Start/End: Complemental strand, 30245275 - 30244698
Alignment:
Q  9 ttaagaaatacctagagatcaaatatgcaaccaagaaaaagtttaatccttcacaggttggtcaaagagtttggtgcatgcatctacacccgtcaatatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  30245275 ttaagaaatacctagagatcaaatatgcaaccaagaaaaagtttaatccttcacaggttggccaaagagtttggtgcatgcatcgacacccgtcaatatt 30245176  T
Q  109 ccttaaaaatctgcaaataacgtaccaacaaaatttcaatactatgaaattcttaacaaaattctgacttaaaccatagaaagataattctcaactaaat 208  Q
    ||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30245175 ccttaaaaatctgcaaataacgtaccagcaaaatttcagtactacgaaattcttaacaaaattctgacttaaaccatagaaagataattctcaactaaat 30245076  T
Q  209 ttctcctaaaggatcaactaaaatcagtactaagaaattatacttattatgtatgcaactccactcatcctaaactaagtttgtattcaaaaagtcttac 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  30245075 ttctcctaaaggatcaactaaaatcagtactaagaaattatacttattatgtatgcaagtccactcatcctaaactaagtttctattcaaaaagtcttac 30244976  T
Q  309 aaaattgcgtcatcaatgctctaatcatagtgccgtaaaaataaatcaaaacatttcatagaattatgaaagggacaatacctctggaaaacattgaaaa 408  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30244975 aaaattgcgtcatcaatgctctaatcatagtgctgtaaaaataaatcaaaacatttcatagaattatgaaagggacaatacctctggaaaacattgaaaa 30244876  T
Q  409 cctccacccattgcatttagcaaagccaaggagagaactctatcaggaactgttgctgctattttacaaactatcatagatcctgtttcaataggcaaac 508  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30244875 cctccactcattgcatttagcaaagccaaggagagaactctatcaagaactgttgctgctattttacaaactatcatagatcctgtttcaataggcaaac 30244776  T
Q  509 atatttaaaaataaacataaacnnnnnnncttaacctaaccaaatcgtaggacagaccatctgaattttaactaaatc 586  Q
    ||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30244775 atatttaaaaataaacacaaacaaaaaaacttaacctaaccaaatcgtaggacagaccatctgaattttaactaaatc 30244698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 57 - 303
Target Start/End: Complemental strand, 30679751 - 30679505
Alignment:
Q  57 cttcacaggttggtcaaagagtttggtgcatgcatctacacccgtcaatattccttaaaaatctgcaaataacgtaccaacaaaatttcaatactatgaa 156  Q
    ||||||||||||||||  |||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| |  |||| | ||||| |||    
T  30679751 cttcacaggttggtca--gagtttagtgcatgcatcgacaaccgtcaatattctttaaaaatctgcaaataacgtaccaagacgattttagtactacgaa 30679654  T
Q  157 attcttaacaaaattctgacttaaa-ccatagaaagataa-ttctcaactaaatttctcctaaaggatcaactaaaatcagtactaagaaattatactta 254  Q
    ||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| || ||||||||||||    
T  30679653 attcttaacaaaattctgactcaaagccatagaaagataaattctcaactaaatttgtcctaaaggatcacctaaaatcagtaccaacaaattatactta 30679554  T
Q  255 ttatgtatgcaactccactcatcctaaactaagtttgtattcaaaaagt 303  Q
    |||||||||||| |||| || |||| ||||||||||||| | |||||||    
T  30679553 ttatgtatgcaagtccagtcgtcctgaactaagtttgtaattaaaaagt 30679505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 74 - 303
Target Start/End: Original strand, 30057504 - 30057735
Alignment:
Q  74 agagtttggtgcatgcatctacacccgtcaatattccttaaaaatctgcaaataacgtaccaacaaaatttcaatactatgaaattcttaacaaaattct 173  Q
    ||||||| ||||||||||| ||| || ||||||||| ||||||||  ||||||||| |||||| | ||||| | |||||||||||||| |||||||||||    
T  30057504 agagtttagtgcatgcatcaacagccatcaatattctttaaaaattagcaaataacataccaagacaattttagtactatgaaattctgaacaaaattct 30057603  T
Q  174 gacttaaa-ccatagaaagataa-ttctcaactaaatttctcctaaaggatcaactaaaatcagtactaagaaattatacttattatgtatgcaactcca 271  Q
    |||| ||| |||||||||||||| ||||||||||||||| ||||||||||||| |||||||| |||| || |||||||||||||||||||||||  ||||    
T  30057604 gactcaaagccatagaaagataaattctcaactaaatttgtcctaaaggatcacctaaaatctgtaccaacaaattatacttattatgtatgcaggtcca 30057703  T
Q  272 ctcatcctaaactaagtttgtattcaaaaagt 303  Q
    ||| || | ||||||||||||| | |||||||    
T  30057704 ctcgtcatgaactaagtttgtaattaaaaagt 30057735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 309 - 488
Target Start/End: Complemental strand, 30679468 - 30679289
Alignment:
Q  309 aaaattgcgtcatcaatgctctaatcatagtgccgtaaaaataaatcaaaacatttcatagaattatgaaagggaca-atacctctggaaaacattgaaa 407  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||||||   || || |||||||| ||||||||| |||||||||| |||||||||||    
T  30679468 aaaatagcgtcgtcaatgctctaatcacagtgccgtaaaaataaatcaaattgtt-caaagaattataaaagggacatatacctctggcaaacattgaaa 30679370  T
Q  408 acctccacccattgcatttagcaaagccaaggagagaactctatcaggaactgttgctgctattttacaaactatcataga 488  Q
    | |||||||  ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||    
T  30679369 atctccacctgttgcatttagcaaagccaaggagagaactctatcaggaaccattgctgctattttacaagctatcataga 30679289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 98 - 303
Target Start/End: Complemental strand, 30715877 - 30715670
Alignment:
Q  98 ccgtcaatattccttaaaaatctgcaaataacgtaccaacaaaatttcaatactatgaaattcttaacaaaattctgacttaaa-ccatagaaagataa- 195  Q
    |||||||||||| ||||||||  ||||||||| |||||| | ||||| | |||||||||||||| ||||||||||||||| ||| ||||||||||||||     
T  30715877 ccgtcaatattctttaaaaattagcaaataacataccaagacaattttagtactatgaaattctcaacaaaattctgactcaaaaccatagaaagataaa 30715778  T
Q  196 ttctcaactaaatttctcctaaaggatcaactaaaatcagtactaagaaattatacttattatgtatgcaactccactcatcctaaactaagtttgtatt 295  Q
    |||||||||||| || ||||||||||||| |||||||| |||| || ||||||||||||||| |||||||  ||||||| || | | ||||||||||| |    
T  30715777 ttctcaactaaaattgtcctaaaggatcacctaaaatctgtaccaacaaattatacttattacgtatgcaggtccactcgtcatgagctaagtttgtaat 30715678  T
Q  296 caaaaagt 303  Q
     |||||||    
T  30715677 taaaaagt 30715670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 302 - 586
Target Start/End: Original strand, 30747198 - 30747463
Alignment:
Q  302 gtcttacaaa-attgcgtcatcaatgctctaatcatagtgccgtaaaaataaatcaaaacatttcatagaattatgaaagggaca-atacctctggaaaa 399  Q
    |||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||  || || |||||||| ||||||||| ||||||||||||||    
T  30747198 gtcttacaaatattgcgtcgtcaatgctctaatcacagtgccgtaaaaataaatcaaaatgtt-caaagaattataaaagggacatatacctctggaaaa 30747296  T
Q  400 cattgaaaacctccacccattgcatttagcaaagccaaggagagaactctatcaggaactgttgctgctattttacaaactatcatagatcctgtttcaa 499  Q
    ||||||||| ||||                   | || |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  30747297 cattgaaaatctcct------------------gtcagggagagaactctatcaggaacaattgctgctattttacaagctatcatagatcctgtttcaa 30747378  T
Q  500 taggcaaacatatttaaaaataaacataaacnnnnnnncttaacctaaccaaatcgtaggacagaccatctgaattttaactaaatc 586  Q
    ||||||||||   ||||||||||||  ||||       || ||||||| |||||| ||||| | |||||||||||||||||||||||    
T  30747379 taggcaaacaatattaaaaataaac--aaacaaataaactcaacctaatcaaatcttaggaaaaaccatctgaattttaactaaatc 30747463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 342 - 578
Target Start/End: Original strand, 29850747 - 29850971
Alignment:
Q  342 cgtaaaaataaatcaaaacatttcatagaattatgaaagggaca-atacctctggaaaacattgaaaacctccacccattgcatttagcaaagccaagga 440  Q
    |||||||| ||||||||||||||||||||| ||| |||| |||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| |    
T  29850747 cgtaaaaacaaatcaaaacatttcatagaactataaaagcgacatatacctttggaaaacattgaaaacctccaccctttgcatttagcaaagccaagta 29850846  T
Q  441 gagaactctatcaggaactgttgctgctattttacaaactatcatagatcctgtttcaataggcaaacatatttaaaaataaacataaacnnnnnnnctt 540  Q
    ||||||||||||||||||  || ||             |||||||||||||||||||||||||  |||||| |||||| |||||| ||||       |||    
T  29850847 gagaactctatcaggaaccattact-------------ctatcatagatcctgtttcaataggttaacataattaaaattaaacacaaacaaataaactt 29850933  T
Q  541 aacctaaccaaatcgtaggacagaccatctgaatttta 578  Q
    ||||||||||||||  || ||| |||||||||| ||||    
T  29850934 aacctaaccaaatctcagaacaaaccatctgaacttta 29850971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 302 - 525
Target Start/End: Complemental strand, 30715641 - 30715436
Alignment:
Q  302 gtcttacaaa-attgcgtcatcaatgctctaatcatagtgccgtaaaaataaatcaaaacatttcatagaattatgaaagggaca-atacctctggaaaa 399  Q
    |||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||  || || |||||||| ||||||| | ||||||||||||||    
T  30715641 gtcttacaaatattgcgtcgtcaatgctctaatcacagtgccgtaaaaataaatcaaaatgtt-caaagaattataaaagggagatatacctctggaaaa 30715543  T
Q  400 cattgaaaacctccacccattgcatttagcaaagccaaggagagaactctatcaggaactgttgctgctattttacaaactatcatagatcctgtttcaa 499  Q
    ||||||||| ||||                   | || |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  30715542 cattgaaaatctcct------------------gtcagggagagaactctatcaggaaccattgctgctattttacaagctatcatagatcctgtttcaa 30715461  T
Q  500 taggcaaacatatttaaaaataaaca 525  Q
    ||||||||| ||||||||||||||||    
T  30715460 taggcaaac-tatttaaaaataaaca 30715436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 148 - 291
Target Start/End: Original strand, 30747012 - 30747157
Alignment:
Q  148 tactatgaaattcttaacaaaattctgacttaaa-ccatagaaagataa-ttctcaactaaatttctcctaaaggatcaactaaaatcagtactaagaaa 245  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||||||| |||| |||||||||| ||||||||||||| |||||||| |||| || |||    
T  30747012 tactatgaaattctcaacaaaattctgactcaaagccatagaaagataaattctgaactaaatttgtcctaaaggatcacctaaaatctgtaccaacaaa 30747111  T
Q  246 ttatacttattatgtatgcaactccactcatcctaaactaagtttg 291  Q
    |||||||||||| |||||||  |||||||||| | |||||||||||    
T  30747112 ttatacttattacgtatgcaggtccactcatcatgaactaagtttg 30747157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 309 - 458
Target Start/End: Original strand, 29869551 - 29869708
Alignment:
Q  309 aaaattgcgtcatcaatgctctaatcatagtgccgtaaaaataaatcaaaacatttcatagaat-------tatgaaagggaca-atacctctggaaaac 400  Q
    |||||||||||||||||||||||| || |||| |||||||  |||||||||||||||||||||        ||| ||||||||| |||||| ||||||||    
T  29869551 aaaattgcgtcatcaatgctctaaacacagtgtcgtaaaatcaaatcaaaacatttcatagaagatagaactataaaagggacatatacctttggaaaac 29869650  T
Q  401 attgaaaacctccacccattgcatttagcaaagccaaggagagaactctatcaggaac 458  Q
    ||||||||||||||||| || ||||||||||||||||| |||| ||||||||||||||    
T  29869651 attgaaaacctccaccctttacatttagcaaagccaagtagaggactctatcaggaac 29869708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 312 - 524
Target Start/End: Original strand, 30057775 - 30057969
Alignment:
Q  312 attgcgtcatcaatgctctaatcatagtgccgtaaaaataaatcaaaacatttcatagaattatgaaagggaca-atacctctggaaaacattgaaaacc 410  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||   |||| |||||||| ||||||||| ||||||||||||||||||||||| |    
T  30057775 attgcgtcatcaatgctctaatcacagtgccgtaaaaataaatcaaaa-tgttcaaagaattataaaagggacatatacctctggaaaacattgaaaatc 30057873  T
Q  411 tccacccattgcatttagcaaagccaaggagagaactctatcaggaactgttgctgctattttacaaactatcatagatcctgtttcaataggcaaacat 510  Q
    |||                   | || |||||||||||||||||||||  ||||||||||||||||| |||||||||||| ||||||||||||||||||     
T  30057874 tcc------------------tgtcagggagagaactctatcaggaaccattgctgctattttacaagctatcatagatcatgtttcaataggcaaacaa 30057955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 620 - 690
Target Start/End: Complemental strand, 30244665 - 30244595
Alignment:
Q  620 tagaaacccattgagtgcccaaaaacatgagcctttttcgaacctaaatgatccatcaaagtaattgcaac 690  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30244665 tagaaacccattgagtgcccaaaaacatgagcctttttcgaacctaaatgatccatcaaagtaattgcaac 30244595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 29850623 - 29850727
Alignment:
Q  155 aaattcttaacaaaattctgacttaaa-ccata-gaaagataattctcaactaaatttctcctaaaggatcaactaaaatcagtactaagaaattatact 252  Q
    ||||||| ||||||||||||||| ||| ||||| ||||   ||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||    
T  29850623 aaattctcaacaaaattctgactcaaagccataagaaatgaaattctcaactaaatttctcctaaaagatcacctaaaattagtactaagaaattatact 29850722  T
Q  253 tatta 257  Q
    |||||    
T  29850723 tatta 29850727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 624 - 688
Target Start/End: Original strand, 29851025 - 29851089
Alignment:
Q  624 aacccattgagtgcccaaaaacatgagcctttttcgaacctaaatgatccatcaaagtaattgca 688  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  29851025 aacccattgaatgcccaaaaacatgagcctttttccaacctaaatgatccaacaaagtaattgca 29851089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 29869375 - 29869475
Alignment:
Q  159 tcttaacaaaattctgactt-aaaccatagaaa-gataattctcaactaaatttctcctaaaggatcaactaaaatcagtactaagaaattatacttatt 256  Q
    ||||| |||||||||||||  |||| ||||||| |  |||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||    
T  29869375 tcttaccaaaattctgactcgaaactatagaaaaggaaattctcaactaaatttaccctaaaggatcacctaaaatcagtactaagaaattatacttatt 29869474  T
Q  257 a 257  Q
    |    
T  29869475 a 29869475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 479 - 586
Target Start/End: Original strand, 30398066 - 30398177
Alignment:
Q  479 ctatcatagatcctgtttcaataggcaaacatatttaaaaataaac----ataaacnnnnnnncttaacctaaccaaatcgtaggacagaccatctgaat 574  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||    | ||||       ||||||||||||||||| ||||||| ||||||||| |    
T  30398066 ctatcatagatcctgtttcaataggcaaacataattaaaattaaacacaaacaaacaaacaaacttaacctaaccaaatcttaggacaaaccatctgagt 30398165  T
Q  575 tttaactaaatc 586  Q
    ||||||||||||    
T  30398166 tttaactaaatc 30398177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 624 - 688
Target Start/End: Original strand, 30398223 - 30398287
Alignment:
Q  624 aacccattgagtgcccaaaaacatgagcctttttcgaacctaaatgatccatcaaagtaattgca 688  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| || ||| |||||||||||||    
T  30398223 aacccgttgagtgcccaaaaacatgagcctttttccaacctaaacgacccaacaaagtaattgca 30398287  T

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Target: chr5; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 30204550 - 30204647
Alignment:
Q  9 ttaagaaatacctagagatcaaatatgcaaccaagaaaaagtttaatccttcacagg-------ttggtcaaagagtttggtgcatgcatctacaccc 99  Q
    ||||||||||||||||| ||||||||||| |||||||||||| ||||||| || |||       |||||||||||||||| |||||||||| ||||||    
T  30204550 ttaagaaatacctagagctcaaatatgcatccaagaaaaagtataatcctgcataggacttgaattggtcaaagagtttgatgcatgcatcaacaccc 30204647  T

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Target: chr5; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 631 - 686
Target Start/End: Original strand, 30433559 - 30433614
Alignment:
Q  631 tgagtgcccaaaaacatgagcctttttcgaacctaaatgatccatcaaagtaattg 686  Q
    |||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  30433559 tgagtgcccaaaaacatgagcctttttccaacctaaatgacccaacaaagtaattg 30433614  T

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Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 635 - 688
Target Start/End: Complemental strand, 30715367 - 30715314
Alignment:
Q  635 tgcccaaaaacatgagcctttttcgaacctaaatgatccatcaaagtaattgca 688  Q
    |||||||||||||||||||||||| ||||||||||| ||| |||||||||||||    
T  30715367 tgcccaaaaacatgagcctttttccaacctaaatgacccaacaaagtaattgca 30715314  T

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Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 630 - 686
Target Start/End: Original strand, 30058047 - 30058103
Alignment:
Q  630 ttgagtgcccaaaaacatgagcctttttcgaacctaaatgatccatcaaagtaattg 686  Q
    ||||| ||||||||||| ||||||||||| ||||||||||| ||| |||||||||||    
T  30058047 ttgagcgcccaaaaacacgagcctttttccaacctaaatgacccaacaaagtaattg 30058103  T

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Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 686
Target Start/End: Original strand, 30747490 - 30747553
Alignment:
Q  624 aacccattgagtgcccaaaaacatgagcctttttcgaacct-aaatgatccatcaaagtaattg 686  Q
    ||||| |||||| |||||||||| ||||||||||| ||||| |||||| ||| |||||||||||    
T  30747490 aacccgttgagtacccaaaaacacgagcctttttccaacctaaaatgacccaacaaagtaattg 30747553  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 586
Target Start/End: Original strand, 30057972 - 30058017
Alignment:
Q  541 aacctaaccaaatcgtaggacagaccatctgaattttaactaaatc 586  Q
    ||||||| |||||| ||||| | |||||||||||||||||||||||    
T  30057972 aacctaatcaaatcttaggaaaaaccatctgaattttaactaaatc 30058017  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 29849647 - 29849699
Alignment:
Q  9 ttaagaaatacctagagatcaaatatgcaaccaagaaaaagtttaatccttca 61  Q
    ||||||||||||| ||| | ||||||||| |||||||||||| ||| ||||||    
T  29849647 ttaagaaatacctggagcttaaatatgcacccaagaaaaagtataacccttca 29849699  T

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Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 538 - 586
Target Start/End: Original strand, 29869775 - 29869823
Alignment:
Q  538 cttaacctaaccaaatcgtaggacagaccatctgaattttaactaaatc 586  Q
    ||| ||||||||||||| ||| ||| |||||||||||||||| ||||||    
T  29869775 cttcacctaaccaaatcttagaacaaaccatctgaattttaagtaaatc 29869823  T

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Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 624 - 664
Target Start/End: Original strand, 29869869 - 29869909
Alignment:
Q  624 aacccattgagtgcccaaaaacatgagcctttttcgaacct 664  Q
    |||||||| |||||||| ||||||||||||||||| |||||    
T  29869869 aacccatttagtgcccagaaacatgagcctttttccaacct 29869909  T

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Target: chr4 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 20300648 - 20300405
Alignment:
Q  12 agaaatacctagagatcaaatatgcaaccaagaaaaagtttaatccttcacaggttggtcaaagagtttggtgcatgcatctacacccgtcaatattcct 111  Q
    |||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||  ||| | |||||||||| |    
T  20300648 agaaatacttagaaatcaaatatgcaaccaagaaaatgtttaatccttcacaggttggtcaaagagtttagtgcatacattgacaactgtcaatattctt 20300549  T
Q  112 taaaaatctgcaaataacgtaccaacaaaatttcaatactatgaaattcttaacaaaattctgacttaaa-ccatagaaagat-aattctcaactaaatt 209  Q
    |||||||||||||||||| |||||  |  |||| | ||  | ||||||||| |||||||||||||| ||| ||||||||| || ||||||||||||||||    
T  20300548 taaaaatctgcaaataacataccatgacgattttagtataacgaaattcttcacaaaattctgactcaaagccatagaaatataaattctcaactaaatt 20300449  T
Q  210 tctcctaaaggatcaactaaaatcagtactaagaaattatactt 253  Q
    | ||||||||||||| ||||||| ||||| ||  ||||||||||    
T  20300448 tgtcctaaaggatcacctaaaataagtaccaacgaattatactt 20300405  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 461 - 586
Target Start/End: Complemental strand, 20298932 - 20298807
Alignment:
Q  461 ttgctgctattttacaaactatcatagatcctgtttcaataggcaaacatatttaaaaataaacataaacnnnnnnncttaacctaaccaaatcgtagga 560  Q
    |||||||||||||||||  ||||||||||| |||||||||||||||||||| ||||||||||||| ||||       |||||||||||| |||| |||||    
T  20298932 ttgctgctattttacaaggtatcatagatcttgtttcaataggcaaacataattaaaaataaacacaaacaaataaacttaacctaacccaatcttagga 20298833  T
Q  561 cagaccatctgaattttaactaaatc 586  Q
    || |||||||||||||||||||||||    
T  20298832 caaaccatctgaattttaactaaatc 20298807  T

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Target: chr1 (Bit Score: 71; Significance: 8e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 387 - 501
Target Start/End: Complemental strand, 596826 - 596712
Alignment:
Q  387 tacctctggaaaacattgaaaacctccacccattgcatttagcaaagccaaggagagaactctatcaggaactgttgctgctattttacaaactatcata 486  Q
    ||||| |||||||||||||||||| |||||  ||||||| ||||| |||| |||||||||||||||||||||  ||||||||| ||||||| ||||||||    
T  596826 tacctttggaaaacattgaaaaccaccacctgttgcattgagcaatgccatggagagaactctatcaggaaccattgctgctaatttacaagctatcata 596727  T
Q  487 gatcctgtttcaata 501  Q
    |||||||||||||||    
T  596726 gatcctgtttcaata 596712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 625 - 688
Target Start/End: Complemental strand, 596562 - 596499
Alignment:
Q  625 acccattgagtgcccaaaaacatgagcctttttcgaacctaaatgatccatcaaagtaattgca 688  Q
    |||||| || |||||||||||||| ||||||||| ||||||||||||||| |||||||||||||    
T  596562 acccatggaatgcccaaaaacatgtgcctttttccaacctaaatgatccaacaaagtaattgca 596499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 217 - 302
Target Start/End: Complemental strand, 597195 - 597111
Alignment:
Q  217 aaggatcaactaaaatcagtactaagaaattatacttattatgtatgcaactccactcatcctaaactaagtttgtattcaaaaag 302  Q
    |||||||| |||||||||||| |||||||||  | || ||||||||||||||||||| ||||| ||||| ||||||| | ||||||    
T  597195 aaggatcacctaaaatcagtagtaagaaatttcatttgttatgtatgcaactccact-atcctgaactacgtttgtaattaaaaag 597111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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