View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3227R-Insertion-7 (Length: 575)
Name: NF3227R-Insertion-7
Description: NF3227R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3227R-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 285
Target Start/End: Original strand, 10434204 - 10434480
Alignment:
| Q |
9 |
actcttttgtattgtcaagactgcaagttcatgtttccacaatcgcattccctccctccgccgccgtctagcggtggaacgacgttgccggacgcattgc |
108 |
Q |
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| T |
10434204 |
actcttttgtattgtcaagactgcaagttcatgtttccacaatcgcattccctccctccaccgccgtctagcggtggaacgacgttgccggacgcattgc |
10434303 |
T |
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| Q |
109 |
gatgccggttctgtgatcggaatgtggcggctgatttcacgttctgtccttactgtggcgaacaactgtaaacgcaagcttggttagtgtttgttgattg |
208 |
Q |
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| T |
10434304 |
gatgccggttctgtgatcggaatgtggctgctgatttcacgttctgtccttactgtggcgaacaactgtaaacgcaagcttggttagtgtttgttgattg |
10434403 |
T |
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| Q |
209 |
ggtttagaaaatcaaatatatgaattctaagagaagctcatgtgattagtataataagattataggttgtgttaagg |
285 |
Q |
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| T |
10434404 |
ggtttagaaaatcaaatatatgaattctaagagaagcttatgtgattagtataataagattataggatgtgttaagg |
10434480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 465 - 575
Target Start/End: Original strand, 10434626 - 10434735
Alignment:
| Q |
465 |
tttgtttaagctaatttcacatttatagtaccaactttctccattaaaaagtatgatagtatcaacattatggttgtctaagtaaaactgaattcaaatt |
564 |
Q |
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| T |
10434626 |
tttgtttaagctaatttcacatttata-taccaactttatccattaaaaagtatgatagtatcaacattatgcttgtctaagtaaaactgaattcaaatt |
10434724 |
T |
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| Q |
565 |
cctttaacaga |
575 |
Q |
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| T |
10434725 |
cctttaacaga |
10434735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 353 - 460
Target Start/End: Original strand, 10434542 - 10434649
Alignment:
| Q |
353 |
tattacaaaattaatattcatgttactttttacatgtttattttcccccttgttattaacagtannnnnnnnnnnnaatgcatttttgtttaagctaatt |
452 |
Q |
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| T |
10434542 |
tattacaaaattaatattcatgttactttttacatgtttattttcccccttgttattaacagtatgtgtgtttgtgaatgcatttttgtttaagctaatt |
10434641 |
T |
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| Q |
453 |
tcacattt |
460 |
Q |
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| T |
10434642 |
tcacattt |
10434649 |
T |
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