View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3227R-Insertion-9 (Length: 511)
Name: NF3227R-Insertion-9
Description: NF3227R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3227R-Insertion-9 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 104 - 323
Target Start/End: Original strand, 10991113 - 10991332
Alignment:
| Q |
104 |
taccatgaaatgacattttttcggattcaacatcaaatttgtttttacagatctctttcaatacatcatatacgtctttgaggcagctatcaaaatattt |
203 |
Q |
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| T |
10991113 |
taccatgaaatgacattttttcggattcaacatcaaatttgtttttacacatctctttcaatacatcatatacgtctttgaggcagctatcaaaatattt |
10991212 |
T |
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| Q |
204 |
tccaaacatctaaaaatcatccatcgagaattcaatgttcttctaaatcaagtatgagaatatttgaaagaattcatctttgaaacattgttactgcatt |
303 |
Q |
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| T |
10991213 |
tccaaacgtctaaaaatcatccatcgagaattcaatgttcttctaaatcaagcatgagaatatttgaaagaattcatctttaaaacattgttagtgcatt |
10991312 |
T |
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| Q |
304 |
gcacaatctaaaggacattc |
323 |
Q |
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| T |
10991313 |
gcacaatctaaaggacattc |
10991332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 335 - 511
Target Start/End: Original strand, 10991604 - 10991780
Alignment:
| Q |
335 |
ggtaccacttgaactggactaacccacaagctattagaatacgatatatcattccgccatctaaaagtttcagcacttccttttttaactacctcattca |
434 |
Q |
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| T |
10991604 |
ggtaccacttgaactggtctaacccacaagctattagaatacgatatatcatttcgccatctaaaagtttcagcacttccttttttaactacctcattca |
10991703 |
T |
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| Q |
435 |
ttgttggattgagtctccttttggattgaacaaccaatttaaactcttctaccaatttgattttgtgcatgcaatat |
511 |
Q |
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| T |
10991704 |
ttgttggattgagtctccttttggattgaacaaccaatttaaactctcctaccaatttgattttgtgcatgcaatat |
10991780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 10990869 - 10990925
Alignment:
| Q |
8 |
attttcttatcttgatagtagcagtattcattccaacattcttggtttagaatcacc |
64 |
Q |
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| T |
10990869 |
attttcttatcttgatagtagcagtattcattccagcattcttggtttagaatcacc |
10990925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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