View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3227_high_10 (Length: 219)
Name: NF3227_high_10
Description: NF3227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3227_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 5995004 - 5994930
Alignment:
| Q |
127 |
tgagggtattgattgccatatcaaaaagcttaggaatttgttggtcaagagaacttctggttttgatggtgttgg |
201 |
Q |
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| T |
5995004 |
tgagggtattgattgccatatcaaaaagctaaggaatttgttggttaagagaacttctggttttgatggtgttgg |
5994930 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 1665444 - 1665482
Alignment:
| Q |
130 |
gggtattgattgccatatcaaaaagcttaggaatttgtt |
168 |
Q |
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| T |
1665444 |
gggtattgattgccatatcaaaaagcttacgaatttgtt |
1665482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 1887100 - 1887064
Alignment:
| Q |
127 |
tgagggtattgattgccatatcaaaaagcttaggaat |
163 |
Q |
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| T |
1887100 |
tgagggtattaattgccatatcaaaaagcttaggaat |
1887064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 1671535 - 1671571
Alignment:
| Q |
127 |
tgagggtattgattgccatatcaaaaagcttaggaat |
163 |
Q |
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| T |
1671535 |
tgagggtattaattgccatatcaaaaaggttaggaat |
1671571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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