View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3227_high_2 (Length: 521)
Name: NF3227_high_2
Description: NF3227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3227_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 268 - 510
Target Start/End: Complemental strand, 48565444 - 48565207
Alignment:
| Q |
268 |
atagaataagcctttggtcatcatggttagactagactgtagaaatctcggaaattcactagcggtatttaaataactcagattaaatgaaaaagactta |
367 |
Q |
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| T |
48565444 |
atagaataagcctttggtcatcatggttagactagactgtagaaatctcggaaattcactagcggtatttaa----ctcagattaaatgaaaa-gactta |
48565350 |
T |
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| Q |
368 |
tgttagttagcatgcagaagtcatcaaatgtttagtttttataagtttgcaccgcaagataatgtaaatcaatatgaactaacaaaaaataattttatta |
467 |
Q |
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| T |
48565349 |
tgttagttagcatgtagaagtcatcaaatgtttagtttttataagtttgcaccgcaagataatgtaaatcaatatgaactaacaaaaaataattttatta |
48565250 |
T |
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| Q |
468 |
aactaccaagtgaatcggtatgcatttgctttcctatgctact |
510 |
Q |
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| T |
48565249 |
aactaccaagtgaatcggtatgcatttgctttcctatgatact |
48565207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 48568026 - 48567921
Alignment:
| Q |
17 |
actctcttgaggctttcaaatatgcttggatatctctttcaaattaatcaattttgaatgacctaaaatgttaactatagacctgctcttaagtacttat |
116 |
Q |
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| T |
48568026 |
actctcttgaggctttcaaatatgctcggatatctctttcaaattaatcaattttgaatgacctaaaatgttaactatagacctgctcttaagtacttat |
48567927 |
T |
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| Q |
117 |
accttg |
122 |
Q |
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| T |
48567926 |
accttg |
48567921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 48565548 - 48565488
Alignment:
| Q |
196 |
agagaaaaaagagggagattgcacacacttcaaatatgatgattcaatttcccatccctca |
256 |
Q |
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| T |
48565548 |
agagaaaaaagagggagattgcacacacttcaaatatgatgattcaatttcccatacctca |
48565488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 148
Target Start/End: Complemental strand, 48565601 - 48565571
Alignment:
| Q |
118 |
ccttgtgaagagaggacgaaccagtgacata |
148 |
Q |
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| T |
48565601 |
ccttgtgaagagaggacgaaccagtgacata |
48565571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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