View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3227_high_4 (Length: 428)
Name: NF3227_high_4
Description: NF3227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3227_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 22050526 - 22050229
Alignment:
| Q |
18 |
cgttgcatcaatgtcgagttcaatcaaaactacaatcatccattaatcacaaaaggatggattgagttgagaacnnnnnnnggtatcaatggcaacgggt |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| |
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| T |
22050526 |
cgttgcatgaatgtcgagttcaatcaaaactacaatcatccattaatcacaaaaggatggattgagttgagagctttttttggtatcaatggcaacaggt |
22050427 |
T |
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| Q |
118 |
ttcttttactcacatatcatggagaaaatctatttggtattgatgtaggacaacgtcaattcaatcctttggaattaccaaattatcatagctatcgata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22050426 |
ttcttttactcacatatcatggagaaaatctatttggtattgatgtaggacaacgtcaattcaatcctttggaattatgaaattatcatagctatcgata |
22050327 |
T |
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| Q |
218 |
cagtgcgcttgagccggcaccatttcaagttaccctcacaaagttttcagccgcaaaatttaaattagtaagttcc-ttatatcttacttgaacacaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22050326 |
cagtgcgcttgagccggcaccatttcaagttaccctcacaaagttttcagccgaaaaatttaaattagtaagttcctttatatcttacttgaacacaa |
22050229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 308 - 414
Target Start/End: Complemental strand, 22050205 - 22050099
Alignment:
| Q |
308 |
aacacaacaagtatcaatctaacatatttttattactttatttagtcattgaagactgactttgcaaactttgtgagaagcactggatatgactatgtgc |
407 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22050205 |
aacataacaagtatcaatctaacatatttttattactttatttagtcattgaagactgactttgcaaactttgtgagaagcactggatatgactacgtgc |
22050106 |
T |
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| Q |
408 |
gaattgt |
414 |
Q |
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||||||| |
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| T |
22050105 |
gaattgt |
22050099 |
T |
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