View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3227_high_8 (Length: 284)

Name: NF3227_high_8
Description: NF3227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3227_high_8
NF3227_high_8
[»] chr3 (10 HSPs)
chr3 (1-276)||(8472207-8472482)
chr3 (10-276)||(6837991-6838275)
chr3 (48-224)||(8568111-8568287)
chr3 (48-146)||(5250862-5250960)
chr3 (61-146)||(4388175-4388260)
chr3 (200-261)||(6917962-6918023)
chr3 (229-276)||(6246177-6246224)
chr3 (229-276)||(6266560-6266607)
chr3 (64-134)||(5268765-5268835)
chr3 (48-120)||(6448046-6448118)
[»] chr7 (1 HSPs)
chr7 (1-276)||(6572403-6572681)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 8472207 - 8472482
Alignment:
Q  1 ggattgcaagctaactgcaccttcataactagtgcaacttctttgtgtcaatcccaacacatccttttgctctgcaagaaattttagctcatctagcaaa 100  Q
    |||||||| ||||||||||||||||||||||| | ||||||| ||||| |||||||||||||||||||| || ||||||| |||||| ||||||||| ||    
T  8472207 ggattgcaggctaactgcaccttcataactagggaaacttctctgtgttaatcccaacacatccttttgatcggcaagaagttttagttcatctagcgaa 8472306  T
Q  101 tcattgatcctagattcaaaccgattagtgaaagctgaaaggaagtgttgaatcttgctctttcgttgtacatttgtatcaaactcatccaacaattgat 200  Q
    ||  |||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  8472307 tctctgatcctagattcaaatcgattaatgaaagctgaaaggaagtgttgaaccttgctctttcgttgtacacttgtatcaaactcatccaacaattgat 8472406  T
Q  201 ctacttcatatacctcgtgttttacacgatcaagccaattcttcacgttttggttctggtatttctttgtctctgc 276  Q
    |||||||||||||||| ||||||| |||||||||||||||||| || |||||||||||||| ||||||||||||||    
T  8472407 ctacttcatatacctcatgttttagacgatcaagccaattcttaacattttggttctggtacttctttgtctctgc 8472482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 6838275 - 6837991
Alignment:
Q  10 gctaactgcaccttcataactagtgcaacttctttgtgtcaatcccaacacatccttttgctctgcaagaaattttagctcatctagcaaatcattgatc 109  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||| |||||||||   ||||||| || ||||||    
T  6838275 gctaaccgcgccttcataactagtgcaacttctttgtgtcaatcccaaatcacccttttgctctgcaagatattttagcttgcctagcaactctttgatc 6838176  T
Q  110 ctagattcaaaccgattagtgaaagctgaaaggaagtgttgaa------------------tcttgctctttcgttgtacatttgtatcaaactcatcca 191  Q
    |||||||||||  ||||||||| ||||||||| |||| || ||                   |||||||||  ||| |||||||||||||| ||||||||    
T  6838175 ctagattcaaatggattagtgatagctgaaagcaagtatttaacctttgatcccaacatatccttgctcttgagttttacatttgtatcaatctcatcca 6838076  T
Q  192 acaattgatctacttcatatacctcgtgttttacacgatcaagccaattcttcacgttttggttctggtatttctttgtctctgc 276  Q
    ||||||||||||||||||||||||| ||||||| |  ||||| ||| |||||||| |||||||| ||||| ||||||||||||||    
T  6838075 acaattgatctacttcatatacctcatgttttagattatcaaaccacttcttcacattttggttttggtacttctttgtctctgc 6837991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 224
Target Start/End: Complemental strand, 8568287 - 8568111
Alignment:
Q  48 tcaatcccaacacatccttttgctctgcaagaaattttagctcatctagcaaatcattgatcctagattcaaaccgattagtgaaagctgaaaggaagtg 147  Q
    ||||||||| |||||||||||| |  ||||| |||||||||   |||| |||||| ||||||||||||||||| |||||||| ||| |||||||||||||    
T  8568287 tcaatcccagcacatccttttgatgagcaagcaattttagcgtgtctaacaaatctttgatcctagattcaaatcgattagtaaaacctgaaaggaagtg 8568188  T
Q  148 ttgaatcttgctctttcgttgtacatttgtatcaaactcatccaacaattgatctacttcatatacctcgtgtttta 224  Q
    |||  |||| | ||||| |||| |||| ||| |||    |||||| | ||| || |||||||||||||| |||||||    
T  8568187 ttgcgtctttccctttctttgtgcattggtagcaataatatccaatagttgctcaacttcatatacctcatgtttta 8568111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 5250862 - 5250960
Alignment:
Q  48 tcaatcccaacacatccttttgctctgcaagaaattttagctcatctagcaaatcattgatcctagattcaaaccgattagtgaaagctgaaaggaagt 146  Q
    ||||||| | || ||||||||||| ||||||||||| |||||  |||||||| || || ||||||||||||||  |||||||||||| ||||| |||||    
T  5250862 tcaatccgagcatatccttttgctttgcaagaaattctagcttctctagcaattctttaatcctagattcaaatggattagtgaaagatgaaaagaagt 5250960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 4388260 - 4388175
Alignment:
Q  61 atccttttgctctgcaagaaattttagctcatctagcaaatcattgatcctagattcaaaccgattagtgaaagctgaaaggaagt 146  Q
    |||||||||||  |||||||||| || ||  |||||||| || |||||||||||||||||  ||||| |||||| ||||| |||||    
T  4388260 atccttttgcttcgcaagaaattctaacttctctagcaattctttgatcctagattcaaatggattaatgaaagatgaaaagaagt 4388175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 6917962 - 6918023
Alignment:
Q  200 tctacttcatatacctcgtgttttacacgatcaagccaattcttcacgttttggttctggta 261  Q
    ||||||||||||||||||||||| | |  |||||||||||||||||||| | |||| |||||    
T  6917962 tctacttcatatacctcgtgtttgagatcatcaagccaattcttcacgtctcggttttggta 6918023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 6246177 - 6246224
Alignment:
Q  229 atcaagccaattcttcacgttttggttctggtatttctttgtctctgc 276  Q
    ||||| |||||||||||||||||| |||| ||| ||||||||||||||    
T  6246177 atcaacccaattcttcacgttttgattctcgtacttctttgtctctgc 6246224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 6266560 - 6266607
Alignment:
Q  229 atcaagccaattcttcacgttttggttctggtatttctttgtctctgc 276  Q
    ||||| |||||||||||||||||| |||| ||| ||||||||||||||    
T  6266560 atcaacccaattcttcacgttttgattctcgtacttctttgtctctgc 6266607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 5268765 - 5268835
Alignment:
Q  64 cttttgctctgcaagaaattttagctcatctagcaaatcattgatcctagattcaaaccgattagtgaaag 134  Q
    |||||| | ||||||||||| |||||  |||||||| || ||||||||||| |||||  ||||||||||||    
T  5268765 cttttgttttgcaagaaattctagcttctctagcaattctttgatcctagactcaaatggattagtgaaag 5268835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 6448118 - 6448046
Alignment:
Q  48 tcaatcccaacacatccttttgctctgcaagaaattttagctcatctagcaaatcattgatcctagattcaaa 120  Q
    ||||| ||| |||||||||||||||||||||| | | ||| |  | |||||| || |||||||||||||||||    
T  6448118 tcaattccagcacatccttttgctctgcaagataatctagattctttagcaagtctttgatcctagattcaaa 6448046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 6572681 - 6572403
Alignment:
Q  1 ggattgcaagctaactgcaccttcataactagtgcaacttc---tttgtgtcaatcccaacacatccttttgctctgcaagaaattttagctcatctagc 97  Q
    |||||||  |||||||||||||||| ||||| |||||||||   |   |||||||||||||||||||||||||||| | ||||||||||| |  || |||    
T  6572681 ggattgctggctaactgcaccttcaaaactactgcaacttccactacctgtcaatcccaacacatccttttgctctacgagaaattttagtttgtcgagc 6572582  T
Q  98 aaatcattgatcctagattcaaaccgattagtgaaagctgaaaggaagtgttgaatcttgctctttcgttgtacatttgtatcaaactcatccaacaatt 197  Q
    |||||||||||||||| |||| | |||||||| |||| |||||||| | |||| | |||| |||||||||||   |||||| ||| ||||||||||||||    
T  6572581 aaatcattgatcctaggttcatatcgattagtcaaagttgaaaggatgcgttgcaccttgatctttcgttgtgagtttgtagcaatctcatccaacaatt 6572482  T
Q  198 gatctacttcatatacctcgtgttttacacgatcaagccaattcttcacgttttggttctggtatttctttgtctctgc 276  Q
    ||||||||||||||||||| ||||||| ||||||||||||| ||||||||||| |||| ||||| |  |||||||||||    
T  6572481 gatctacttcatatacctcatgttttagacgatcaagccaaatcttcacgtttgggttttggtactgttttgtctctgc 6572403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University