View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3227_low_14 (Length: 236)
Name: NF3227_low_14
Description: NF3227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3227_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 44998899 - 44999116
Alignment:
| Q |
1 |
tcacgaaccgtttgaacagtactttcttgccgtgacacgttcatccgaacacgtgacgactcagggactctcctaatgggtcccatcacaacttcccatt |
100 |
Q |
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| T |
44998899 |
tcacgaaccgtttgaacagtactttcttgccgtgacacgttcatccgaacacgtgacgactcagggactctcctaatgggtcccatcacaacttcc---- |
44998994 |
T |
|
| Q |
101 |
cattcaactgggattttcatatgatc--atatctccgttccgtacactttgtttgtatttttattcatttatttattatccggtcacaaactagaaccat |
198 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
44998995 |
cattcaactgggattttcatatgatcatatatctccgttccgtacactttgtttgta--tttattcatttatttattttccggtcacaaactagaaccat |
44999092 |
T |
|
| Q |
199 |
aacaaaataatgcatgcattttat |
222 |
Q |
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|||||||||||||||||||||||| |
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| T |
44999093 |
aacaaaataatgcatgcattttat |
44999116 |
T |
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