View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3227_low_7 (Length: 412)
Name: NF3227_low_7
Description: NF3227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3227_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Complemental strand, 40182160 - 40181779
Alignment:
| Q |
11 |
cagagataattcggcgataaaatttgttaagcactctagttgtagtgaagggacctgagcaatgcatatgaaaccaagaaaaaaggggtcaataatttag |
110 |
Q |
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| T |
40182160 |
cagagataattcggcgataaaatttgtcaagcactctagttgtagtgaagggacctgagcaatgcatatgaaaccaagaaaaaaggggtcaataatttag |
40182061 |
T |
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| Q |
111 |
aaatggaatcctaataattagagtcatgtgccataacatacaaatcaatgctatctcatcaaatgtgagaaatggaaatagtcataagtttgagtttctc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40182060 |
aaatggaatcctaataattagagtcatgtgccataacatacaaatcaatgctatctcatcaaatgtgagaaatggaaatagtcataagtttgagtttctc |
40181961 |
T |
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| Q |
211 |
tgtaatttatcatcagaagtgagtgtgtcatgtgttcttacttgcttctccaattacttcttatagcttatatcatgtgttcttacaggttggtgcaaat |
310 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40181960 |
tgtaatttatcatcagaagtgagtgtgtaatgtgttcttacttgcttctccaattacttcttatagcttatatcatgtgttcttacaggttggtgcaaat |
40181861 |
T |
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| Q |
311 |
aaagtgtgtgaaaaattaggtgctcgtgtttgaacatcctatgacacaagtgcatgagccttataaatcaccaatgaaaagtag |
394 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40181860 |
aaag--tgtgaaaaattaggtgctcgtgtttgaacatcctatgacacaagtgcatgagccttataaatcaccaatgaaaagtag |
40181779 |
T |
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