View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3228_high_12 (Length: 232)
Name: NF3228_high_12
Description: NF3228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3228_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 32372179 - 32371964
Alignment:
| Q |
1 |
aaaatagaaaagaggaacatatcagactggacaaagcattgcaaaccagacaaacgaaaaaagagaagaggaccacaaacctgacatgcgaacacaagag |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32372179 |
aaaatagaaaagaggaacacatcagactggacaaagcattgcaaaccagacaaacgaaaaaagagaagaggaccacaaacctgacatgcgaacacaagag |
32372080 |
T |
|
| Q |
101 |
aaggccgaaaaaacacagtgcaactcgtctgagacgaaagccagagatgacacaaagcaacagtatcacacagagatttaagagaaacacaaagactaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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|
| T |
32372079 |
aaggccgaaaaaacacagtgcaactcgtctgagacgaaagccagagatgacacaaagcaacagtgtcacacagagatgtaagagaaacacaaagactaga |
32371980 |
T |
|
| Q |
201 |
gattagagaagatatt |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
32371979 |
gattagagaagatatt |
32371964 |
T |
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