View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3228_high_5 (Length: 293)

Name: NF3228_high_5
Description: NF3228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3228_high_5
NF3228_high_5
[»] chr5 (11 HSPs)
chr5 (1-157)||(1501185-1501343)
chr5 (191-275)||(1501377-1501461)
chr5 (191-275)||(25955968-25956052)
chr5 (92-147)||(38951524-38951579)
chr5 (191-275)||(38280281-38280365)
chr5 (202-260)||(7886377-7886435)
chr5 (191-275)||(42250123-42250207)
chr5 (101-148)||(38280192-38280239)
chr5 (101-147)||(25955879-25955925)
chr5 (105-146)||(7886489-7886530)
chr5 (101-157)||(42250241-42250296)
[»] chr4 (6 HSPs)
chr4 (191-275)||(52055156-52055240)
chr4 (28-80)||(14056243-14056295)
chr4 (29-80)||(55039345-55039396)
chr4 (191-275)||(1158263-1158347)
chr4 (101-142)||(49866778-49866819)
chr4 (101-146)||(52055067-52055112)
[»] chr8 (5 HSPs)
chr8 (191-275)||(3780367-3780451)
chr8 (191-275)||(4076952-4077036)
chr8 (101-147)||(3780278-3780324)
chr8 (101-145)||(4076863-4076907)
chr8 (29-80)||(31386901-31386952)
[»] chr7 (19 HSPs)
chr7 (191-275)||(496690-496774)
chr7 (191-275)||(7527272-7527356)
chr7 (191-275)||(2286465-2286549)
chr7 (191-275)||(11765714-11765798)
chr7 (192-271)||(25185942-25186021)
chr7 (8-78)||(12103200-12103270)
chr7 (191-275)||(23844642-23844726)
chr7 (101-157)||(40855070-40855125)
chr7 (101-148)||(23844768-23844815)
chr7 (99-146)||(31427168-31427215)
chr7 (29-80)||(41546047-41546098)
chr7 (101-146)||(2286593-2286638)
chr7 (218-275)||(42535249-42535306)
chr7 (191-275)||(48057707-48057791)
chr7 (101-148)||(496816-496863)
chr7 (101-148)||(11765840-11765887)
chr7 (101-147)||(42535134-42535180)
chr7 (101-148)||(7527183-7527230)
chr7 (227-275)||(4649481-4649529)
[»] chr2 (4 HSPs)
chr2 (191-272)||(11828967-11829048)
chr2 (191-275)||(13922192-13922276)
chr2 (101-157)||(11829082-11829137)
chr2 (101-148)||(13922318-13922365)
[»] chr3 (11 HSPs)
chr3 (8-80)||(13822988-13823060)
chr3 (191-275)||(47940833-47940917)
chr3 (191-275)||(49786400-49786484)
chr3 (191-260)||(8153001-8153070)
chr3 (99-157)||(49786518-49786575)
chr3 (231-275)||(29836817-29836861)
chr3 (29-80)||(4264452-4264503)
chr3 (101-148)||(8436815-8436862)
chr3 (192-275)||(48778982-48779065)
chr3 (191-261)||(8436904-8436974)
chr3 (112-148)||(47940959-47940995)
[»] chr6 (2 HSPs)
chr6 (191-275)||(33594527-33594611)
chr6 (101-148)||(33594438-33594485)
[»] chr1 (14 HSPs)
chr1 (191-275)||(20186849-20186933)
chr1 (191-275)||(30339643-30339727)
chr1 (191-275)||(51787279-51787363)
chr1 (28-80)||(25871704-25871756)
chr1 (29-80)||(19151991-19152042)
chr1 (29-80)||(23679050-23679101)
chr1 (218-260)||(9673004-9673046)
chr1 (99-157)||(20186758-20186815)
chr1 (10-75)||(38245591-38245656)
chr1 (28-80)||(17224166-17224218)
chr1 (101-148)||(9672891-9672938)
chr1 (101-147)||(51787405-51787451)
chr1 (101-146)||(30339771-30339816)
chr1 (191-248)||(43740415-43740472)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 1501185 - 1501343
Alignment:
Q  1 tgggctgttttttaattattaatgacattgccaca--taagggtggtagaaggtgtattgccacctatggtggtatacctataaggactcaaaaattatg 98  Q
    |||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1501185 tgggttgtttgttaattattaatgacattgccacacataagggtggtagaaggtgtattgccacctatggtggtatacctataaggactcaaaaattatg 1501284  T
Q  99 gaaaaatgattgatagaccactcatattttcataccacccatacaccccccacatattt 157  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  1501285 gaaaaatgattggtagaccactcatattttcataccacacatacaccccccacatattt 1501343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 1501377 - 1501461
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||    
T  1501377 caaagtgtatatggggtctaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgtcacctatggatctgcatgtatc 1501461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 25955968 - 25956052
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||||| |||||| ||||| |||||||| |||||| ||||||||||||| |||||||||||||||||| ||||||||||||    
T  25955968 caaagtgtttgtggggtctaggccacatgtcacatgtttgtgtggaggtttaaatgtgtatgccacctatgagtgtgcatgtatc 25956052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 38951579 - 38951524
Alignment:
Q  92 aattatggaaaaatgattgatagaccactcatattttcataccacccatacacccc 147  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38951579 aattattgaaaaatgattgatagaccactcatattttcataccacccatacacccc 38951524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 38280281 - 38280365
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||||| |||||| ||||  || ||||| |||||||||||||||||||||||||||| ||||||||| |||| ||||||||    
T  38280281 caaagtgtttgtggggtctaggacacgtgtcacatgtttatgtggaggtttaagtgtgtataccacctatggatgtacatgtatc 38280365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 7886435 - 7886377
Alignment:
Q  202 tggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctat 260  Q
    |||| ||||||| |||||||| |||||| |||||||||||||||||||||| |||||||    
T  7886435 tgggatttaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgtcacctat 7886377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 42250207 - 42250123
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||||| |||||| || || |||||||| |||||| ||||||||||||||||| |||| ||  ||||  ||||||||||||    
T  42250207 caaagtgtttgtggggtctaagccacatgtcacatgtttgtgtggaggtttaagtgtctatgtcatttatgggtgtgcatgtatc 42250123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 38280192 - 38280239
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacaccccc 148  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||    
T  38280192 aaaatgattggtagaccactcatatttccataccactcatacaccccc 38280239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 25955879 - 25955925
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacacccc 147  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||||||    
T  25955879 aaaatgattggtagaccactcataatttcatatcacccatacacccc 25955925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 7886530 - 7886489
Alignment:
Q  105 tgattgatagaccactcatattttcataccacccatacaccc 146  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  7886530 tgattggtagaccactaatattttcataccacccatacaccc 7886489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 42250296 - 42250241
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacaccccccacatattt 157  Q
    |||||||||| ||||||||||||| ||||||| ||||| | || |||||||||||||    
T  42250296 aaaatgattggtagaccactcataatttcatatcacccgtgca-cccccacatattt 42250241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 52055156 - 52055240
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||||| |||||| ||||| |||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  52055156 caaagtgtttgtggggtctaggccacatgtcacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 52055240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 14056243 - 14056295
Alignment:
Q  28 ttgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 80  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||||    
T  14056243 ttgccacacaagggtggtataaggtgtattgccacctatggtggtacacctat 14056295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 55039396 - 55039345
Alignment:
Q  29 tgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 80  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  55039396 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctat 55039345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 1158263 - 1158347
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||| ||||| | |||| ||||| |||||||| |||||| |||||||||||||||||||| |||  ||||  |||||||||||||    
T  1158263 caaaatgtttgtagggtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtacgccttctatcgatgtgcatgtatc 1158347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 49866819 - 49866778
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatac 142  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  49866819 aaaatgattggtagaccactcatattttcataccatccatac 49866778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 52055067 - 52055112
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacaccc 146  Q
    |||||||||| ||||||||||||| ||||||| || ||||||||||    
T  52055067 aaaatgattggtagaccactcataatttcataacatccatacaccc 52055112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 3780367 - 3780451
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||||| | ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| |||| ||||||||    
T  3780367 caaagtgtttctcgggtttaggctacatgtcacatgtttgtgtggaggtttgagtgtgtatgccacctatggatgtacatgtatc 3780451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 4076952 - 4077036
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||| ||||| |||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||  | ||||||||||    
T  4076952 caaattgtttgtggggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatgggtatgcatgtatc 4077036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 3780278 - 3780324
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacacccc 147  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  3780278 aaaatgattggtagaccactcatattttcataccacccatacacccc 3780324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 4076863 - 4076907
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacacc 145  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||    
T  4076863 aaaatgattggtagaccactcataatttcataccacccatacacc 4076907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 31386952 - 31386901
Alignment:
Q  29 tgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 80  Q
    ||||||||||| |||||| ||||||| |||||||||||||||||| ||||||    
T  31386952 tgccacataagagtggtataaggtgtgttgccacctatggtggtacacctat 31386901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 496774 - 496690
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||||| |||||| ||||  || |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  496774 caaagtgtttgtggggtctaggacacgtgtcatatgtttatgtggaggtttaagtgtgtatgccacctatggatgtacatgtatc 496690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 7527272 - 7527356
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||||||||| || ||||| |||||||| |||||| ||||||||||||||||||||||||||| |||||| ||||||||||    
T  7527272 caaagtgtttatggagtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgccaccaatgaatatgcatgtatc 7527356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 2286549 - 2286465
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||||| |||||| ||||| |||||||| |||||| ||||||||||||||||||||||||||| ||   ||||||||||||    
T  2286549 caaagtgtttgtggggtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgccaccaataggtgtgcatgtatc 2286465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 11765798 - 11765714
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||||| ||||||  |||  || ||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  11765798 caaagtgtttgtggggtcaaggacacgtgtcacatgtttatgtggaggtttaagtgtgtatgccacctatggatgtacatgtatc 11765714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 25185942 - 25186021
Alignment:
Q  192 aaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatg 271  Q
    ||||| ||| |||||| ||||| |||||||| |||||| |||||||||||||||||||||| ||||||||| ||||||||    
T  25185942 aaagtatttgtggggtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgtcacctatgagtgtgcatg 25186021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 12103270 - 12103200
Alignment:
Q  8 ttttttaattattaatgacattgccacataagggtggtagaaggtgtattgccacctatggtggtatacct 78  Q
    |||||| |||||||||   ||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  12103270 tttttttattattaattgtattgccacacaagggtggtataaggtgtattgccacctatggtggtatacct 12103200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 23844726 - 23844642
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||||| || ||| ||||  |||||||| |||||||||||||| ||| ||||||||||  ||||||| |||||||||||||    
T  23844726 caaagtgtttgtgaggtctagggcacatgtcacatgtttatgtggagatttgagtgtgtatgttacctatggatgtgcatgtatc 23844642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 40855070 - 40855125
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacaccccccacatattt 157  Q
    |||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||    
T  40855070 aaaatgattgttagaccacttatattttcataccacccataca-cccccacatattt 40855125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 23844815 - 23844768
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacaccccc 148  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  23844815 aaaatgattgataaaccactcatattttcataccacctatacaccccc 23844768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 31427168 - 31427215
Alignment:
Q  99 gaaaaatgattgatagaccactcatattttcataccacccatacaccc 146  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||    
T  31427168 gaaaaatgattggtagaccactcatattttcataccacccaaacaccc 31427215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 41546098 - 41546047
Alignment:
Q  29 tgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 80  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  41546098 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctat 41546047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 2286638 - 2286593
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacaccc 146  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||    
T  2286638 aaaatgattggtagaccactcataatttcataccacccatacaccc 2286593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 42535249 - 42535306
Alignment:
Q  218 tgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||    
T  42535249 tgtcacatgtttatgtggaggtttaagtgtgtatgtcacctatgagtgtacatatatc 42535306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 48057707 - 48057791
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||||| |||||| ||||  || ||||| ||||||||||||| |||||| | |||||||||||||||  ||| ||||||||    
T  48057707 caaagtgtttgtggggtctaggacacgtgtcacatgtttatgtggaagtttaaatatgtatgccacctatgggtgtacatgtatc 48057791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 496863 - 496816
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacaccccc 148  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||    
T  496863 aaaatgattggtagaccactcatatttccataccactcatacaccccc 496816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 11765887 - 11765840
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacaccccc 148  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||    
T  11765887 aaaatgattggtagaccactcatatttccataccactcatacaccccc 11765840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 42535134 - 42535180
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacacccc 147  Q
    |||||||||| |||||||||||||||| |||||||| ||||||||||    
T  42535134 aaaatgattggtagaccactcatatttccataccactcatacacccc 42535180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 7527183 - 7527230
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacaccccc 148  Q
    |||||||||| ||||||||||||| |||| ||||||||||||| ||||    
T  7527183 aaaatgattggtagaccactcataatttcgtaccacccatacagcccc 7527230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 4649481 - 4649529
Alignment:
Q  227 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    ||||||||||| ||||| |||||||||||| ||||||| ||||| ||||    
T  4649481 tttatgtggagttttaaatgtgtatgccacttatgaatttgcatctatc 4649529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 11829048 - 11828967
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgt 272  Q
    |||||||||| |||||| ||||  |||||||| || |||||||||||||||||||||||||||||||||||| |||||||||    
T  11829048 caaagtgtttgtggggtctaggacacatgtcacatatttatgtggaggtttaagtgtgtatgccacctatgagtgtgcatgt 11828967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 13922276 - 13922192
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||||| |||||| ||||  || ||||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||||    
T  13922276 caaagtgtttgtggggtctaggacacgtgtcacatgtttacgtggaggtttaagtgtgtatgccacctatggatgtacatgtatc 13922192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 11829137 - 11829082
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacaccccccacatattt 157  Q
    |||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||    
T  11829137 aaaatgattggtagaccacttatattttcataccacccatacac-ccccacatattt 11829082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 13922365 - 13922318
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacaccccc 148  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||    
T  13922365 aaaatgattggtagaccactcatatttccataccactcatacaccccc 13922318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 13822988 - 13823060
Alignment:
Q  8 ttttttaattattaatgacattgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 80  Q
    |||||| |||||||||   |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13822988 tttttttattattaattgtattgccacataagggtggtataaggtgtattgccacctatggtggtatacctat 13823060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 47940917 - 47940833
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||||| |||||| ||||| |||||||| |||||| ||||||||||||||||||||||||||| ||   ||||||||||||    
T  47940917 caaagtgtttgtggggtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgccaccaataggtgtgcatgtatc 47940833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 49786484 - 49786400
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||||| |||||| ||||  || ||||| ||||||||||||||||||||||||||||||||||||||  ||| ||||||||    
T  49786484 caaagtgtttgtggggtctaggacacgtgtcacatgtttatgtggaggtttaagtgtgtatgccacctatgggtgtacatgtatc 49786400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 8153070 - 8153001
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctat 260  Q
    |||||||||| ||| || ||||| |||||||| ||||||||||||||||||| |||||||||||||||||    
T  8153070 caaagtgtttgtggagtctaggccacatgtcacatgtttatgtggaggtttaggtgtgtatgccacctat 8153001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 49786575 - 49786518
Alignment:
Q  99 gaaaaatgattgatagaccactcatattttcataccacccatacaccccccacatattt 157  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  49786575 gaaaaatgattggtagaccactcatattttcataccactcatacac-ccccacatattt 49786518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 29836817 - 29836861
Alignment:
Q  231 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  29836817 tgtggaggtttaagtgtgtatgccacctatgagtgtgcatgtatc 29836861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 4264503 - 4264452
Alignment:
Q  29 tgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 80  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  4264503 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctat 4264452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 8436815 - 8436862
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacaccccc 148  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||    
T  8436815 aaaatgattggtagaccactcatatttccataccactcatacaccccc 8436862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 275
Target Start/End: Original strand, 48778982 - 48779065
Alignment:
Q  192 aaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    ||||||||||||| || ||| | |||||||| || |||||||||| |||||| || |||||||||||||   ||||||||||||    
T  48778982 aaagtgtttatggagtctagaccacatgtcacatatttatgtggatgtttaaatgagtatgccacctataggtgtgcatgtatc 48779065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 8436904 - 8436974
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatg 261  Q
    |||||||||| |||||| || |  || |||||||| ||||||| ||||||||| |||||||||||||||||    
T  8436904 caaagtgtttgtggggtctaagacacgtgtcatatatttatgtagaggtttaaatgtgtatgccacctatg 8436974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 47940995 - 47940959
Alignment:
Q  112 tagaccactcatattttcataccacccatacaccccc 148  Q
    ||||||||||||| |||||||||||||||||||||||    
T  47940995 tagaccactcataatttcataccacccatacaccccc 47940959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 33594527 - 33594611
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||| ||| |||||| ||||| |||||||| |||||| |||| |||||||||||||||||||||| ||| |||||||||||||    
T  33594527 caaagtatttgtggggtctaggccacatgtcacatgtttgtgtgaaggtttaagtgtgtatgccaccaatggatgtgcatgtatc 33594611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 33594438 - 33594485
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacaccccc 148  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||    
T  33594438 aaaatgattggtagaccactcataatttcataccacccatacaccccc 33594485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 20186849 - 20186933
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||||| |||| | ||||  || ||||| ||||||||||||||||||||||||||||||||||||||  ||| ||||||||    
T  20186849 caaagtgtttgtgggatctaggacacgtgtcacatgtttatgtggaggtttaagtgtgtatgccacctatgggtgtacatgtatc 20186933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 30339727 - 30339643
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||||| |||||| ||||  || ||||| |||||||||| |||||||||||||||||||||||||||  ||| ||||||||    
T  30339727 caaagtgtttgtggggtctaggacacgtgtcacatgtttatgtagaggtttaagtgtgtatgccacctatgggtgtacatgtatc 30339643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 51787363 - 51787279
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 275  Q
    |||||||||| |||||| |||   || ||||| ||||||||||| |||||||||||||||||||||||||| |||| ||||||||    
T  51787363 caaagtgtttgtggggtctagagcacgtgtcacatgtttatgtgaaggtttaagtgtgtatgccacctatggatgtacatgtatc 51787279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 25871756 - 25871704
Alignment:
Q  28 ttgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 80  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||||    
T  25871756 ttgccacaaaagggtggtataaggtgtattgccacctatggtggtacacctat 25871704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 19151991 - 19152042
Alignment:
Q  29 tgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 80  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  19151991 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctat 19152042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 23679050 - 23679101
Alignment:
Q  29 tgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 80  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  23679050 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctat 23679101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 9673004 - 9673046
Alignment:
Q  218 tgtcatatgtttatgtggaggtttaagtgtgtatgccacctat 260  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  9673004 tgtcacatgtttatgtggaggtttaagtgtgtatgccacctat 9673046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 20186758 - 20186815
Alignment:
Q  99 gaaaaatgattgatagaccactcatattttcataccacccatacaccccccacatattt 157  Q
    |||||||||||| |||||||||||||||| |||||||| |||||| |||||||||||||    
T  20186758 gaaaaatgattggtagaccactcatatttccataccactcataca-cccccacatattt 20186815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 38245591 - 38245656
Alignment:
Q  10 ttttaattattaatgacattgccacataagggtggtagaaggtgtattgccacctatggtggtata 75  Q
    |||| ||||||||||| ||||||||| |||||||||| ||||||||||||||  || |||||||||    
T  38245591 tttttattattaatgatattgccacacaagggtggtacaaggtgtattgccatgtacggtggtata 38245656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 17224218 - 17224166
Alignment:
Q  28 ttgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 80  Q
    |||||||| || ||||||| |||||||||||||||||||||||||| ||||||    
T  17224218 ttgccacacaaaggtggtataaggtgtattgccacctatggtggtacacctat 17224166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 9672891 - 9672938
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacaccccc 148  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||    
T  9672891 aaaatgattggtagaccactcatatttccataccactcatacaccccc 9672938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 51787451 - 51787405
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacacccc 147  Q
    |||||||||| |||||||||||||||| |||||||| ||||||||||    
T  51787451 aaaatgattggtagaccactcatatttccataccactcatacacccc 51787405  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 30339816 - 30339771
Alignment:
Q  101 aaaatgattgatagaccactcatattttcataccacccatacaccc 146  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||||    
T  30339816 aaaatgattggtagaccactcatatttttataccactcatacaccc 30339771  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 43740415 - 43740472
Alignment:
Q  191 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtg 248  Q
    |||||||||| || ||||||||| |||| ||| |||||| ||||||||||||||||||    
T  43740415 caaagtgtttgtgaggtttaggccacatatcacatgtttgtgtggaggtttaagtgtg 43740472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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