View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3228_low_1 (Length: 762)
Name: NF3228_low_1
Description: NF3228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3228_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 679; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 19 - 746
Target Start/End: Complemental strand, 43802809 - 43802082
Alignment:
| Q |
19 |
atgttggcactgcaagcaagtgtttggctcttggggttgagagaccaaacttttcagtcatgtctaaatcatttggagtcatattcgagggaagctccca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802809 |
atgttggcactgcaagcaagtgtttggctcttggggttgagagaccaaacttttcagtcatgtctaaatcatttggagtcatattcgagggaagctccca |
43802710 |
T |
|
| Q |
119 |
agaaaagcaatgtaccaattgagcaacaacaagtttaactgtagttagtcccaagtttattccaggacatcctcttcgaccaaaaccaaatggtataaat |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802709 |
agtaaagcaatgtaccaattgagcaacaacaagtttaactgtagttagtcccaagtttattccaggacatcctcttcgaccaaaaccaaatggtataaat |
43802610 |
T |
|
| Q |
219 |
tggaaatcatgtccgcggtagtctaaacttttatccacgaatctctctggaaaaaattcttcagcattattagaccagatcgcagaatctcttcctattg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802609 |
tggaaatcatgtccgcggtagtctaaacttttatccacgaatctctccggaaaaaattcttcagcattattagaccagatcgcagaatctcttcctattg |
43802510 |
T |
|
| Q |
319 |
cccataaattcaaaattattcttgnnnnnnnctttatgaaataaccatgcactgtagaatcttgtgttgactcgcgtggcacaagtggtcccggagggta |
418 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43802509 |
cccataaattcaaaattattcttgtttttttctttatgaaataaccatgcactgtagaatcttgtgttgactcgcgtggcacaagtggtcccggagggta |
43802410 |
T |
|
| Q |
419 |
taatcttaaggtctccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttcttcgccccaaccacgttatctagctct |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
43802409 |
taatcttaaggtctccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttgttcgccccaaccacgttatctagctct |
43802310 |
T |
|
| Q |
519 |
tgttggagatttttcatcactcttggatgcctcatgagctctgataaagcccactccacaactgttgcggaagtttcaaatgccccggcaatcatgtcta |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
43802309 |
tgttggagatttttcatcactcttggatgcctcatgagctctgataaagcccactccacaaccgttgcggaagtttcaaatgccccggcaatcatgtcta |
43802210 |
T |
|
| Q |
619 |
gggatatagcctttatgtttgttcgatcaacgacatgggttttttcgtcagagagatcgatcggttggtgcatcagtgagagtagaatgtctacgaaatc |
718 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
43802209 |
gggatatagcctttatgtttgttcgatcaacgacatgggttttttcgtcagagggatcgatcggttggtgcatcagtgagagtagaatgtctacgaagtc |
43802110 |
T |
|
| Q |
719 |
cttatgcttctgcccttcactttgcaca |
746 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
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|
| T |
43802109 |
cttatgcttctgcccttcgctttgcaca |
43802082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 19 - 746
Target Start/End: Complemental strand, 43813378 - 43812651
Alignment:
| Q |
19 |
atgttggcactgcaagcaagtgtttggctcttggggttgagagaccaaacttttcagtcatgtctaaatcatttggagtcatattcgagggaagctccca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||| |
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|
| T |
43813378 |
atgttggcactgcaagcaagtgtttggctcttgggattgagagaccaaacttttcagtcatgtctaaatcatttatagtcatatttgagggaagcttcca |
43813279 |
T |
|
| Q |
119 |
agaaaagcaatgtaccaattgagcaacaacaagtttaactgtagttagtcccaagtttattccaggacatcctcttcgaccaaaaccaaatggtataaat |
218 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
43813278 |
agaaaagcaatgtatcaattgagcaacaacaagtttaactgtagctagtcccaagtttattccaggacatcctcttcgaccgaaaccaaatggtataaat |
43813179 |
T |
|
| Q |
219 |
tggaaatcatgtccgcggtagtctaaacttttatccacgaatctctctggaaaaaattcttcagcattattagaccagatcgcagaatctcttcctattg |
318 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||| |||||||||||| |||||||||| |||||||||||||| ||| ||||||||||||||||| |
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|
| T |
43813178 |
tggaaatcatgtccacggtagtcgaagtttttatccacaaatctctctggataaaattcttcggcattattagaccatatcttagaatctcttcctattg |
43813079 |
T |
|
| Q |
319 |
cccataaattcaaaattattcttgnnnnnnnctttatgaaataaccatgcactgtagaatcttgtgttgactcgcgtggcacaagtggtcccggagggta |
418 |
Q |
| |
|
|||| ||||||| ||||| ||||| |||||||||||||||||| ||||||| ||| | |||||||||||| |||||||||||||| | ||| || |
|
|
| T |
43813078 |
cccacaaattcacaattactcttgtttttttctttatgaaataaccatgaactgtagcatcctctgttgactcgcgcggcacaagtggtcctgcaggata |
43812979 |
T |
|
| Q |
419 |
taatcttaaggtctccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttcttcgccccaaccacgttatctagctct |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| || |||||| || || |||||||| ||| |||||| || |||| |||||| |
|
|
| T |
43812978 |
taatcttaaggtctccatgatcacaatatctaagtaacttaactttgccatatcattctcctccactaatttgttcatcccaactacactatccagctct |
43812879 |
T |
|
| Q |
519 |
tgttggagatttttcatcactcttggatgcctcatgagctctgataaagcccactccacaactgttgcggaagtttcaaatgccccggcaatcatgtcta |
618 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||| |||| |||||||||| |
|
|
| T |
43812878 |
tgttggagatttttcattactcttggatgcctcatgagctcggataaagcccactccacaatggttgcagaagtgtcaaatgccgcggcgatcatgtcta |
43812779 |
T |
|
| Q |
619 |
gggatatagcctttatgtttgttcgatcaacgacatgggttttttcgtcagagagatcgatcggttggtgcatcagtgagagtagaatgtctacgaaatc |
718 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||| ||| |||||||||| |||| |||| |||||| ||||||||||||||||||||| ||| | |
|
|
| T |
43812778 |
aggctatagcctttatgtttgttcgatcaatgacatggctttgttcgtcagagggatcaatcgtctggtgcgtcagtgagagtagaatgtctatgaagtt |
43812679 |
T |
|
| Q |
719 |
cttatgcttctgcccttcactttgcaca |
746 |
Q |
| |
|
|| || |||||||||||| |||||||| |
|
|
| T |
43812678 |
tttgtgtttctgcccttcattttgcaca |
43812651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 31950331 - 31950543
Alignment:
| Q |
20 |
tgttggcactgcaagcaagtgtttggctcttggggttgagagaccaaacttttcagtcatgtctaaatcatttggagtcatattcgagggaagctcccaa |
119 |
Q |
| |
|
||||||||| || |||||||| || |||||| ||||||| ||||| |||||| |||| || |||||||| |||| |||| ||||||| |||||| |
|
|
| T |
31950331 |
tgttggcacagctagcaagtggttaaatcttggcattgagagtccaaatttttcactcatatccaaatcattaggagacataccaaagggaagttcccaa |
31950430 |
T |
|
| Q |
120 |
gaaaagcaatgtaccaattgagcaacaacaagtttaactgtagttagtcccaagtt-tattccaggacatcctcttcgaccaaaaccaaatggtataaat |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| ||| |||| ||| |||| |||||||| || ||||| ||||| | ||||||||||||| | |
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|
| T |
31950431 |
tcaaagcaatgtaccaattgggcaacaacaagcctaacagtatttag-ccctagttgaattccagggcaccctctacgacccgacccaaatggtataagt |
31950529 |
T |
|
| Q |
219 |
tggaaatcatgtcc |
232 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
31950530 |
tgaaaatcatgtcc |
31950543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 31890783 - 31890728
Alignment:
| Q |
177 |
attccaggacatcctcttcgaccaaaaccaaatggtataaattggaaatcatgtcc |
232 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| | ||| ||||||||||| |
|
|
| T |
31890783 |
attccaggacaacttcttcgaccaaaaccaaatggtatgagttgaaaatcatgtcc |
31890728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 574
Target Start/End: Complemental strand, 29944776 - 29944727
Alignment:
| Q |
525 |
agatttttcatcactcttggatgcctcatgagctctgataaagcccactc |
574 |
Q |
| |
|
|||||||||||||||||||||||||| | || || |||||||||||||| |
|
|
| T |
29944776 |
agatttttcatcactcttggatgccttaaaagttcggataaagcccactc |
29944727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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