View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3228_low_10 (Length: 247)
Name: NF3228_low_10
Description: NF3228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3228_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 38074976 - 38074741
Alignment:
| Q |
1 |
agatccaattttattcatggaacgtgctgctgtcccattctgggccaattaaagtgtcggttcacatgattatatgctcatgcttgtcggtgatctactc |
100 |
Q |
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| T |
38074976 |
agatccaattt-attcatggaacgtgctgctgtcccattctgggccaattaaagtgtcggttcacatgattatatgctcatgcttgtcggtgatctactc |
38074878 |
T |
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| Q |
101 |
ataaaataaaggccaattcatcaaaattatgtttaatcatgaaaccaaaaacaaagtttatatcaacattgtattagaaaaaaggaaattttatttggtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38074877 |
ataaaataaaggccaattcatcaaaattatgtttaatcatgaaaccaaaaacaaagtttatatcaacattgtattagaaaaaaggaaattttatttggtc |
38074778 |
T |
|
| Q |
201 |
gcaacttcaaattaagtgtatatttggtactcatttt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
38074777 |
gcaacttcaaattaagtgtatatttggtactcatttt |
38074741 |
T |
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