View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3228_low_2 (Length: 626)
Name: NF3228_low_2
Description: NF3228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3228_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 609
Target Start/End: Original strand, 14774289 - 14774891
Alignment:
| Q |
1 |
tgacggatcaccaggaaaacccatgtataccaagttctccacactaaatattgggtttagaagtgccatgagtgcccactgttcggaaaacacataatat |
100 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
14774289 |
tgacggattaccatgaaaacccatgtataccaagttctccacactaaagattgggtttagaagtgtcatgagtgcccactgttcagaaaacacataatat |
14774388 |
T |
|
| Q |
101 |
aaatcaacagtgatgcaaattaaatgctatatacattgaaaagatacacagaccagacatatagtcatacatcatgtaaaactaaggcaaatttgatcct |
200 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| || |
|
|
| T |
14774389 |
aaatcaacggtgatgcaaattaaatcctatatgcattgaaaagatacacagaccagaca-------atacatcatgtaaaactgaggcaaatttgattct |
14774481 |
T |
|
| Q |
201 |
cagaatacttttcaaattgagtgataaaactatccatagaagcccaccacttttctacaaacattgctcaacaaaatacaaggaagagggactagag--- |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14774482 |
cagaatacttttcaaattgagtgataaaactatgcatagaaggccaccacttttcttcaaacattgctcaacaaaatacaaggaagagggactagagaga |
14774581 |
T |
|
| Q |
298 |
-acaaagataatagacatgtgcacctctgacaaaaatgcatcaagtgatagtcctccaaatgcagtcctttctacaacatccttgtatggatattcaatc |
396 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14774582 |
gacaaagataaaagacttgtgcacctctgacaaaaatgcatcaagtgatagtcctccaaatgcattcctttctacagcatccttgtatggatattcaatc |
14774681 |
T |
|
| Q |
397 |
cagggactgcaattaaaagtcataaaatatcaaataacattgccaagagtcctaattgacattcagactcgggaaa--catacatataaaaaatgtcgta |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| |||||||||| |
|
|
| T |
14774682 |
cagggactgcaattaaaagtcataaaatatcaaataacattgccaagagtcctaattgacattcagatttgggaaaggcatacatat---aaatgtcgta |
14774778 |
T |
|
| Q |
495 |
gcttgactttgtaaaaaacaatgaagaaaagtcacaagtatagaccacatccttaaagcatgtatgtacatttgaataattgcacgacataagaaagatt |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14774779 |
gcttgactttgtaaaaaacaatgaagaaaagtcacaagtat--accacatccttcaagcatgtatgtacatttgaataattgcacgacataagaaagatt |
14774876 |
T |
|
| Q |
595 |
acaagcaatctatct |
609 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
14774877 |
acaagaaatctatct |
14774891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 598
Target Start/End: Original strand, 15016366 - 15016962
Alignment:
| Q |
5 |
ggatcaccaggaaaacccatgtataccaagttctccacactaaatattgggtttagaagtgccatgagtgcccactgttcggaaaacacataatataaa- |
103 |
Q |
| |
|
|||||||||||| |||| ||||| | || |||||||||||||| | ||||||||||||| ||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
15016366 |
ggatcaccaggataaccaatgtacatcagattctccacactaaaggtcgggtttagaagtgtcatgagtgcccactgtttggaaaacatataatataaaa |
15016465 |
T |
|
| Q |
104 |
-tcaacagtgatgcaaattaaatgctatatacattgaaaagatacacagaccagacatatagtcatacatcatgtaaaactaaggcaaatttgatcctca |
202 |
Q |
| |
|
||| | ||||||||||| |||| |||||| || ||||||||||||||||||||| || ||||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
15016466 |
atcagcggtgatgcaaataaaatactatatgcagggaaaagatacacagaccagacgtacagtcatacatcatgtaaaactgaggcaaccatgattctca |
15016565 |
T |
|
| Q |
203 |
gaatacttttcaaattgagtgataaaactatccatagaagcccaccacttttctacaaacattgctcaacaaaatacaaggaagagggactagagacaaa |
302 |
Q |
| |
|
|||||||||||||| ||||||||| ||| | |||||| ||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
15016566 |
aaatacttttcaaatatagtgataaa--tattc--------ccaccatttttctataaacattgttcaacaaaatataaggaagagggcctagagacaaa |
15016655 |
T |
|
| Q |
303 |
gataatagacatg-----tgcacctctgacaaaaatgcatcaagtgatagtcctccaaatgcagtcctttctacaacatccttgtatggatattcaatcc |
397 |
Q |
| |
|
||||| ||| || ||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
15016656 |
gataaatgacttgtgcactgcacctctgacaaaaatgcatcaagtgacaatcctccagatgcattcctttctacagcatccttgtatggattttcaatcc |
15016755 |
T |
|
| Q |
398 |
agggactgcaattaaaagtcat-aaaatatcaaataacattgccaagagtcctaattgacattcagactcgggaaa--catacatataaaaaatgtcgta |
494 |
Q |
| |
|
||||||||||||||||| | | ||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| | ||||||| ||| | || |
|
|
| T |
15016756 |
agggactgcaattaaaaattttaaaaatatcaaaaagcattgccaagagtcctaattgacattcagactcgggaaaggcatgcctataaaagatgccata |
15016855 |
T |
|
| Q |
495 |
gct-tgactttgtaaaaaacaatgaaga---aaagtcacaagtatagaccacatccttaaagcatgtatgtacatttgaataattgcacgacataagaaa |
590 |
Q |
| |
|
||| |||||||| |||||| |||||| ||||||| |||||| |||||||||||||| || ||||||||||||| |||| ||| |||||||||| |
|
|
| T |
15016856 |
gctgggactttgt-taaaacagtgaagaagcaaagtcagcagtataaaccacatccttaaaaattgaatgtacatttgaaaaattccacaacataagaaa |
15016954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 210 - 548
Target Start/End: Original strand, 15049336 - 15049680
Alignment:
| Q |
210 |
tttcaaattgagtgataaaactatccatagaagcccaccacttttctacaaacattgctcaacaaaatacaaggaagagggactagagacaaagataata |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| |||||||| |||||||||| | |
|
|
| T |
15049336 |
tttcaaattgagtgataaaactatccatagaagcccaccacttttctacttgcatttttcaacaaaatattaggaagaaggactagacacaaagataaaa |
15049435 |
T |
|
| Q |
310 |
gacatgtgcacctctgacaaaaatgcatcaagtgatagtcctccaaatgcagtcctttctacaacatccttgtatggatattcaatccagggactgcaat |
409 |
Q |
| |
|
||| ||||||||||||| ||||||||||| | ||||||| |||||||| | ||||| ||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15049436 |
gacttgtgcacctctgataaaaatgcatctaatgatagttctccaaatatattccttcctacagcatccttgtatggattttcaatccagggactgcaat |
15049535 |
T |
|
| Q |
410 |
taaaagtcataaaatatcaaataacattgccaagagtcctaattgacattcagactcgggaaa--catacatat-aaaaaatgtcgtagcttgactttgt |
506 |
Q |
| |
|
||||| |||||||||||||||||||||||| | |||| | ||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||| || |
|
|
| T |
15049536 |
taaaaatcataaaatatcaaataacattgctatgagttcaaattgacattcagactcgggaaaggcatacatataaaaaaatgtcatagctggacttcgt |
15049635 |
T |
|
| Q |
507 |
aaaaaacaatgaaga---aaagtcacaagtatagaccacatcctt |
548 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
15049636 |
aaaaaacaatgaagaagcaaagtcacaagtatataccacatcctt |
15049680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 5 - 432
Target Start/End: Original strand, 17881583 - 17882019
Alignment:
| Q |
5 |
ggatcaccaggaaaacccatgtataccaagttctccacactaaatattgggtttagaagtgccatgagtgcccactgttcggaaaacacata----atat |
100 |
Q |
| |
|
|||||||||||| |||| ||| ||| || ||||||||||||||| |||| |||||||||| |||||||||||||||| | |||||| ||| ||| |
|
|
| T |
17881583 |
ggatcaccaggataaccaatgcatatcaggttctccacactaaaggttggatttagaagtgtcatgagtgcccactgtccaaaaaacatatatgttataa |
17881682 |
T |
|
| Q |
101 |
aaatcaacagtgatgcaaattaaatgctatatacattgaaaagatacacagaccagacatatagtcatacatcatgtaaaactaaggcaaatttgatcct |
200 |
Q |
| |
|
|| |||| || |||||| ||||||||| || | ||||| || |||||||||||| || ||||||||||||||||||||| || || ||||| | |
|
|
| T |
17881683 |
aattcaatggtaatgcaagttaaatgctgcatgtactgaaat-atgcacagaccagacgtacagtcatacatcatgtaaaactgagataaccttgattcc |
17881781 |
T |
|
| Q |
201 |
cagaatacttttcaaattgagtgataaaactatc---catagaagcccaccacttttctacaaacattgctcaacaaaatacaaggaagagg---gacta |
294 |
Q |
| |
|
|| | |||| |||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| ||||| |
|
|
| T |
17881782 |
caaagaacttatcaaattgagtgatcaaactattattcatagaagcccaccactcttctacaaacattgttcaacaaaatataaggaagaggagtgacta |
17881881 |
T |
|
| Q |
295 |
gagacaaagataatagacatgtgcacctctgacaaaaatgcatcaagtgatagtcctccaaatgcagtcctttctacaacatccttgtatggatattcaa |
394 |
Q |
| |
|
||||||||||||| |||| | | ||||||||||||||| ||||| ||||||||||||||| |||| | |||| |||| |||||| ||||||||||||| |
|
|
| T |
17881882 |
gagacaaagataaaagacttattcacctctgacaaaaacgcatcgagtgatagtcctccacatgctttactttttacagcatcctcatatggatattcaa |
17881981 |
T |
|
| Q |
395 |
tccagggactgcaattaaaagtcataaaatatcaaata |
432 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17881982 |
tccagggactgcaattaaaaatcataaaatatcaaata |
17882019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 508 - 597
Target Start/End: Original strand, 17882054 - 17882143
Alignment:
| Q |
508 |
aaaaacaatgaagaaaagtcacaagtatagaccacatccttaaagcatgtatgtacatttgaataattgcacgacataagaaagattaca |
597 |
Q |
| |
|
|||||||| |||| ||||||| ||||||| |||||||||||||||||||| |||||||||||| |||||||| |||| ||||||||||| |
|
|
| T |
17882054 |
aaaaacaaagaagcaaagtcaaaagtatataccacatccttaaagcatgtgtgtacatttgaaaaattgcacagcatatgaaagattaca |
17882143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 15049255 - 15049314
Alignment:
| Q |
101 |
aaatcaacagtgatgcaaattaaatgctatatacattgaaaagatacacagaccagacat |
160 |
Q |
| |
|
||||||| ||||||||||| ||||| || | ||| |||||||||||||||||||||||| |
|
|
| T |
15049255 |
aaatcaattgtgatgcaaatgaaatgatacacacactgaaaagatacacagaccagacat |
15049314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 15048844 - 15048890
Alignment:
| Q |
36 |
tctccacactaaatattgggtttagaagtgccatgagtgcccactgt |
82 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
15048844 |
tctccacactaagggttgggtttagaagtgtcatgagtgcccactgt |
15048890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 3e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 101 - 449
Target Start/End: Complemental strand, 36875384 - 36875041
Alignment:
| Q |
101 |
aaatcaacagtgatgcaaattaaatgctatatacattgaaaagatacacagaccagacatatagtcatacatcatgtaaaactaaggcaaatttgatcct |
200 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||| |||||| |||| || |
|
|
| T |
36875384 |
aaatcaacagcgatgcaaat-aaatgttatatgcattgaaaagatacacagacaagacatacagtcatacatcatgcaaaactgaggcaaccgtgattct |
36875286 |
T |
|
| Q |
201 |
cagaatacttttcaaattgagtgataaaactatccatagaagcccaccacttttctacaaacattgctcaacaaaatacaaggaagagggactagagaca |
300 |
Q |
| |
|
|| || ||| | ||||||||| |||| ||| | ||||||||||| ||||| ||||| ||||||| ||||||||| | | ||||||||||||||||| |
|
|
| T |
36875285 |
ca-aacactaattaaattgagtaataagactttacatagaagcccgccactcttctatgaacattgttcaacaaaa---atgtaagagggactagagaca |
36875190 |
T |
|
| Q |
301 |
aagataatagacatgtgcacctctgacaaaaatgcatcaagtgatagtcctccaaatgcagtcctttctacaacatccttgtatggatattcaatccagg |
400 |
Q |
| |
|
|| ||| ||| |||||||||| |||||||||||||||||||||||||||||||||||| | ||||| ||| |||||| ||| ||| | | ||||||| |
|
|
| T |
36875189 |
aaaatagaagatgtgtgcacctcagacaaaaatgcatcaagtgatagtcctccaaatgcatttctttcaacagcatcctcatatagatttccgatccagg |
36875090 |
T |
|
| Q |
401 |
gactgcaattaaaagtcataaaatatcaaataacattgccaagagtcct |
449 |
Q |
| |
|
|||| ||||| ||| | ||||||||||||||||||||||||| ||||| |
|
|
| T |
36875089 |
gactacaatttaaaattgtaaaatatcaaataacattgccaagggtcct |
36875041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 110 - 275
Target Start/End: Complemental strand, 36875869 - 36875706
Alignment:
| Q |
110 |
gtgatgcaaattaaatgctatatacattgaaaagatacacagaccagacatatagtcatacatcatgtaaaactaaggcaaatttgatcctcagaatact |
209 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||||||||||| ||||| | ||||| ||||||||||||| | |||| ||||| |||| || ||| |
|
|
| T |
36875869 |
gtgatgcaaat-aaatgttatatgcattgaaaagatacacagaccatacatacaatcatatatcatgtaaaactgaagcaatcttgattctca-aacact |
36875772 |
T |
|
| Q |
210 |
tttcaaattgagtgataaaactatccatagaagcccaccacttttctacaaacattgctcaacaaa |
275 |
Q |
| |
|
|| |||| ||||||||||||| ||||||||| | ||| ||| |||||| ||||||| |||||||| |
|
|
| T |
36875771 |
atttaaatagagtgataaaactttccatagaaactcacaactcttctacgaacattgttcaacaaa |
36875706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 36875632 - 36875582
Alignment:
| Q |
214 |
aaattgagtgataaaactatccatagaagcccaccacttttctacaaacat |
264 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| || ||| ||||| |
|
|
| T |
36875632 |
aaattgagtgagaaaaccatccatagaagcccaccactcttatacgaacat |
36875582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 256 - 436
Target Start/End: Complemental strand, 53867559 - 53867379
Alignment:
| Q |
256 |
tacaaacattgctcaacaaaatacaaggaagagggactagagacaaagataatagacatgtgcacctctgacaaaaatgcatcaagtgatagtcctccaa |
355 |
Q |
| |
|
|||| |||||| |||||||||| | ||||||||||| ||||||| ||| || | || | |||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
53867559 |
tacacacattgttcaacaaaatgcgaggaagagggaatagagactaaggaaaaaaactcgagcacctttgacaaaaatgcatcaagtgatagtcctctaa |
53867460 |
T |
|
| Q |
356 |
atgcagtcctttctacaacatccttgtatggatattcaatccagggactgcaattaaaagtcataaaatatcaaataacat |
436 |
Q |
| |
|
|||| || ||| || |||||| ||| ||| | | ||||| |||||| |||||| ||||||||||||| ||||||||| |
|
|
| T |
53867459 |
atgcgctctcatctgcagcatcctcgtagggagctccgatccaaggactgaaattaacagtcataaaatattaaataacat |
53867379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 54159736 - 54159849
Alignment:
| Q |
238 |
agaagcccaccacttttctacaaacattgctcaacaaaatacaaggaagagggactagagacaaagataatagacatgtgcacctctgacaaaaatgcat |
337 |
Q |
| |
|
||||||||| |||| | |||||||||||| ||| ||||| |||||| |||||| |||||| ||| | | || | || |||||| |||||||||||| | |
|
|
| T |
54159736 |
agaagcccatcactctcctacaaacattgttcagtaaaattcaaggacgagggaacagagaccaaggtgaaaggcttgagcacctttgacaaaaatgctt |
54159835 |
T |
|
| Q |
338 |
caagtgatagtcct |
351 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
54159836 |
caagtgatagtcct |
54159849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 458
Target Start/End: Complemental strand, 43528086 - 43528020
Alignment:
| Q |
392 |
caatccagggactgcaattaaaagtcataaaatatcaaataacattgccaagagtcctaattgacat |
458 |
Q |
| |
|
||||||| |||| | |||||||| || |||||||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
43528086 |
caatccaaggacggaaattaaaaatcctaaaatatcaaatatcattggcaagagtcctcattgacat |
43528020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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