View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3228_low_3 (Length: 616)

Name: NF3228_low_3
Description: NF3228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3228_low_3
NF3228_low_3
[»] chr3 (3 HSPs)
chr3 (11-601)||(44456458-44457046)
chr3 (312-378)||(35903721-35903789)
chr3 (305-357)||(29642452-29642504)
[»] chr8 (14 HSPs)
chr8 (305-378)||(7870336-7870409)
chr8 (305-358)||(11520054-11520107)
chr8 (307-378)||(38444430-38444501)
chr8 (313-371)||(6461919-6461977)
chr8 (305-358)||(42503078-42503131)
chr8 (305-358)||(42503885-42503938)
chr8 (305-378)||(11519382-11519456)
chr8 (309-358)||(17923956-17924005)
chr8 (305-378)||(38443727-38443800)
chr8 (305-378)||(42578741-42578814)
chr8 (305-370)||(12203306-12203371)
chr8 (305-370)||(12447734-12447799)
chr8 (312-356)||(17938229-17938273)
chr8 (312-356)||(17942984-17943028)
[»] chr2 (7 HSPs)
chr2 (305-378)||(35029824-35029898)
chr2 (305-378)||(34228179-34228253)
chr2 (305-378)||(34229038-34229111)
chr2 (305-370)||(39062259-39062324)
chr2 (305-356)||(10148577-10148628)
chr2 (305-356)||(29762223-29762274)
chr2 (305-378)||(39062863-39062936)
[»] chr1 (2 HSPs)
chr1 (310-370)||(7338767-7338827)
chr1 (316-370)||(7338049-7338104)
[»] chr7 (7 HSPs)
chr7 (305-358)||(35752377-35752430)
chr7 (305-380)||(35753028-35753103)
chr7 (312-356)||(43845858-43845902)
chr7 (305-378)||(39020965-39021039)
chr7 (312-356)||(43844848-43844892)
chr7 (312-378)||(5956471-5956537)
chr7 (312-349)||(4126754-4126791)
[»] chr4 (7 HSPs)
chr4 (305-369)||(24484824-24484888)
chr4 (311-378)||(44516817-44516885)
chr4 (305-370)||(39310436-39310501)
chr4 (305-378)||(39311335-39311408)
chr4 (311-358)||(44517450-44517497)
chr4 (309-350)||(14088313-14088354)
chr4 (312-341)||(36381157-36381186)
[»] chr5 (3 HSPs)
chr5 (311-378)||(120105-120172)
chr5 (305-359)||(43379448-43379502)
chr5 (305-359)||(43378623-43378677)
[»] scaffold0151 (1 HSPs)
scaffold0151 (305-358)||(20792-20845)
[»] chr6 (1 HSPs)
chr6 (312-378)||(34260148-34260214)


Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 11 - 601
Target Start/End: Complemental strand, 44457046 - 44456458
Alignment:
Q  11 gtgaaaagtgcatttaaaccttaagagagtgaatgctaaaaaacatgttaaaattagaatcttggtcacggttttatttgaacataatagtccttagttg 110  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44457046 gtgaaaagtgcatttaagccttaagagagtgaatgctaaaaaacgtgttaaaattagaatcttggtcgcggttttatttgaacataatagtccttagttg 44456947  T
Q  111 gtgataggtagtgagggaggggcatctcttctaaatctcagttatattgattgttgtgttggattggataagtacaaataatattacattgttttttctt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  44456946 gtgataggtagtgagggaggggcatctcttctaaatctcagttatattgattgttgtgttggattggataagtataaataatattacattgttttttgtt 44456847  T
Q  211 gattgatatttatttttgactcaaggataataatgatagaatttataggaagaaggagcgcgtagcctttattttcattaaagaa-annnnnnnncaaac 309  Q
    ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||          ||| |    
T  44456846 gattgatatttatctttgactcaaggataataatgatagagtttgtaggaagaaggagcgcgtagcatttattttcattaaagaattgtttttttcaatc 44456747  T
Q  310 cttttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaatgaggtaaataataattttagggactggctggaacatgtga 409  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||| |||    
T  44456746 cttttaatcacagccattgattttattttttccacatgtctcacatctaaaacttg---ggaggtaaataataattttagggactggctggaacatatga 44456650  T
Q  410 acgtggtgaatnnnnnnnnnngattagtgagggtcagtgatatgcagttgtgcctatatatatgagactatagttagggttttgtcatagtgaaataaga 509  Q
    ||| |||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44456649 acgcggtgaataataaaaaaagattagtgagggtcagtgatatgcagttgtgcctatatatatgagactatagttagggttttgtcatagtgaaataaga 44456550  T
Q  510 gagggtaagcggcagattaacattcagatgatctatggtgtgggttgttgaggggaatgttgtctgactcaaggcttttcatagtttgatct 601  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  44456549 gagggtaagcggcagaataacattcagatgatctatggtgtgggttgttgaggggaatgttgcctggctcaaggcttttcatagtttgatct 44456458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 35903789 - 35903721
Alignment:
Q  312 tttaatcacaaccattgattttatttttt--ccacatgtctcacatctaaaacttgaaatgaggtaaat 378  Q
    |||||||||||||||||||||||||||||  ||||||||| |||||| | ||||||||||| |||||||    
T  35903789 tttaatcacaaccattgattttattttttccccacatgtcacacatccataacttgaaatggggtaaat 35903721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 29642504 - 29642452
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatct 357  Q
    |||| |||||||||||| ||||||||| ||||||||||||||||| |||||||    
T  29642504 caaatcttttaatcacatccattgattctattttttccacatgtcacacatct 29642452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 305 - 378
Target Start/End: Original strand, 7870336 - 7870409
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaatgaggtaaat 378  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||| |||||||    
T  7870336 caaaccttttaatcacaaccattgattttattttttccatatgtcacacatctataacttcaaatggggtaaat 7870409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 305 - 358
Target Start/End: Original strand, 11520054 - 11520107
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatcta 358  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  11520054 caaaccttttaatcacaaccattgattttatttttttcacatgtcacacatcta 11520107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 38444430 - 38444501
Alignment:
Q  307 aaccttttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaatgaggtaaat 378  Q
    |||||||||||||||||| ||||||| | |||||||||||||| |||||||| ||||||||||  |||||||    
T  38444430 aaccttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaat 38444501  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 313 - 371
Target Start/End: Complemental strand, 6461977 - 6461919
Alignment:
Q  313 ttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaatga 371  Q
    ||||||||||||||||||||||||||| |||||||||  ||||||| ||||||||||||    
T  6461977 ttaatcacaaccattgattttatttttgccacatgtcatacatctataacttgaaatga 6461919  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 42503131 - 42503078
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatcta 358  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||    
T  42503131 caaaccttttaatcacagccattgattttattttttctacatgtcacacatcta 42503078  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 305 - 358
Target Start/End: Original strand, 42503885 - 42503938
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatcta 358  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  42503885 caaaccttttaatcacagccattaattttattttttccacatgtcacacatcta 42503938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 305 - 378
Target Start/End: Complemental strand, 11519456 - 11519382
Alignment:
Q  305 caaaccttttaatcacaaccattgattttatt-ttttccacatgtctcacatctaaaacttgaaatgaggtaaat 378  Q
    ||||||||||||||||| | |||||||||||| ||||||||||||| ||||||||  | |||||||| |||||||    
T  11519456 caaaccttttaatcacagctattgattttatttttttccacatgtcacacatctatgatttgaaatggggtaaat 11519382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 17924005 - 17923956
Alignment:
Q  309 ccttttaatcacaaccattgattttattttttccacatgtctcacatcta 358  Q
    |||||||||||||| |||||||||| ||||||||||||||| ||||||||    
T  17924005 ccttttaatcacaatcattgattttcttttttccacatgtcacacatcta 17923956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 305 - 378
Target Start/End: Complemental strand, 38443800 - 38443727
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaatgaggtaaat 378  Q
    |||||||||||||||||  |||||||||||||||||| ||||||| | || |||  |||||||||| |||||||    
T  38443800 caaaccttttaatcacagtcattgattttattttttctacatgtcacgcaactatgacttgaaatggggtaaat 38443727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 305 - 378
Target Start/End: Complemental strand, 42578814 - 42578741
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaatgaggtaaat 378  Q
    |||| ||||||||| || ||||||||||||||||| |||||||||  |||||||  |||||||||| |||||||    
T  42578814 caaatcttttaatctcagccattgattttatttttgccacatgtcatacatctatgacttgaaatggggtaaat 42578741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 305 - 370
Target Start/End: Original strand, 12203306 - 12203371
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaatg 370  Q
    |||||||||||||||||| |||||||| |||||||| |||||  | ||||||||  ||||||||||    
T  12203306 caaaccttttaatcacaatcattgattgtatttttttcacataccacacatctatgacttgaaatg 12203371  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 305 - 370
Target Start/End: Original strand, 12447734 - 12447799
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaatg 370  Q
    |||||||||||||||||| |||||||| |||||||| |||||  | ||||||||  ||||||||||    
T  12447734 caaaccttttaatcacaatcattgattgtatttttttcacataccacacatctatgacttgaaatg 12447799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 356
Target Start/End: Complemental strand, 17938273 - 17938229
Alignment:
Q  312 tttaatcacaaccattgattttattttttccacatgtctcacatc 356  Q
    |||||||||| |||||||||||||||||||||||| || ||||||    
T  17938273 tttaatcacacccattgattttattttttccacatttcgcacatc 17938229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 17942984 - 17943028
Alignment:
Q  312 tttaatcacaaccattgattttattttttccacatgtctcacatc 356  Q
    |||||||||| |||||||||||||| ||| |||||||| ||||||    
T  17942984 tttaatcacagccattgattttattatttacacatgtcacacatc 17943028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 305 - 378
Target Start/End: Original strand, 35029824 - 35029898
Alignment:
Q  305 caaaccttttaatcacaaccattgatttt-attttttccacatgtctcacatctaaaacttgaaatgaggtaaat 378  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| ||||||||  |||||||||| |||||||    
T  35029824 caaaccttttaatcacaaccattgattttgtttttttccacatgtcacacatctatgacttgaaatggggtaaat 35029898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 305 - 378
Target Start/End: Complemental strand, 34228253 - 34228179
Alignment:
Q  305 caaaccttttaatcacaaccattgattttatttttt-ccacatgtctcacatctaaaacttgaaatgaggtaaat 378  Q
    |||| ||||||||| ||  ||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||||    
T  34228253 caaagcttttaatctcaggcattgattttatttttttccacatgtcacacatctataacttgaaatggggtaaat 34228179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 305 - 378
Target Start/End: Original strand, 34229038 - 34229111
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaatgaggtaaat 378  Q
    |||| ||||||||| || |||||| |||||||||||||||||||| ||||||||  |||| ||||| |||||||    
T  34229038 caaagcttttaatctcagccattggttttattttttccacatgtcacacatctatgacttaaaatggggtaaat 34229111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 305 - 370
Target Start/End: Complemental strand, 39062324 - 39062259
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaatg 370  Q
    |||||||||||||||||| |||| ||||||||||| |||||||||  |||||||  ||||||||||    
T  39062324 caaaccttttaatcacaaacattcattttatttttgccacatgtcatacatctatgacttgaaatg 39062259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 10148577 - 10148628
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatc 356  Q
    ||||| |||||||| ||||| |||||||||||||| ||||||||| ||||||    
T  10148577 caaactttttaatctcaacccttgattttatttttaccacatgtcacacatc 10148628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 29762223 - 29762274
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatc 356  Q
    |||||| ||||||||||| ||||||| ||||||| |||||||||| ||||||    
T  29762223 caaaccatttaatcacaatcattgatcttattttatccacatgtcacacatc 29762274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 378
Target Start/End: Original strand, 39062863 - 39062936
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaatgaggtaaat 378  Q
    ||||||||||||||  | |||||||||||||| || |||||||||  |||||||  |||||||||  |||||||    
T  39062863 caaaccttttaatcctagccattgattttattgttgccacatgtcatacatctatgacttgaaattgggtaaat 39062936  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 7338767 - 7338827
Alignment:
Q  310 cttttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaatg 370  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||  ||||||||||    
T  7338767 cttttaatcacaaccattgattttattttttccacatgttacacatctatgacttgaaatg 7338827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 370
Target Start/End: Complemental strand, 7338104 - 7338049
Alignment:
Q  316 atcacaaccatt-gattttattttttccacatgtctcacatctaaaacttgaaatg 370  Q
    |||||||||||| |||||||||||||||||||||| || |||||  ||||||||||    
T  7338104 atcacaaccattagattttattttttccacatgtcacatatctatgacttgaaatg 7338049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 35752430 - 35752377
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatcta 358  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  |||||||    
T  35752430 caaaccttttaatcacaaccattgattttatttttgccacatgtcatacatcta 35752377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 380
Target Start/End: Original strand, 35753028 - 35753103
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaatgaggtaaataa 380  Q
    |||| |||||||||||| ||||||||||||||||| |||||||||  |||||||  || ||||||| |||||||||    
T  35753028 caaatcttttaatcacagccattgattttatttttgccacatgtcatacatctatgacgtgaaatggggtaaataa 35753103  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 43845858 - 43845902
Alignment:
Q  312 tttaatcacaaccattgattttattttttccacatgtctcacatc 356  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||    
T  43845858 tttaatcacaaccattgattttattttttccatatgtcgcacatc 43845902  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 378
Target Start/End: Complemental strand, 39021039 - 39020965
Alignment:
Q  305 caaaccttttaatcacaaccattgattttatt-ttttccacatgtctcacatctaaaacttgaaatgaggtaaat 378  Q
    |||||| ||||||||| ||||||||||||||| ||||||||||||| |||||| |   ||||||||| |||||||    
T  39021039 caaaccatttaatcacgaccattgattttatttttttccacatgtcacacatccatgtcttgaaatggggtaaat 39020965  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 356
Target Start/End: Complemental strand, 43844892 - 43844848
Alignment:
Q  312 tttaatcacaaccattgattttattttttccacatgtctcacatc 356  Q
    |||||||||| |||||||||||||||||| |||||||| ||||||    
T  43844892 tttaatcacagccattgattttattttttacacatgtcacacatc 43844848  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 5956537 - 5956471
Alignment:
Q  312 tttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaatgaggtaaat 378  Q
    |||||||||| |||||||||||||||| | |||||||| |||||| |  ||| |||||| |||||||    
T  5956537 tttaatcacagccattgattttattttatacacatgtcacacatccattactagaaatggggtaaat 5956471  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 4126791 - 4126754
Alignment:
Q  312 tttaatcacaaccattgattttattttttccacatgtc 349  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  4126791 tttaatcacaaccattgattttattatttacacatgtc 4126754  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 24484888 - 24484824
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaat 369  Q
    |||| ||||||||| || |||||| |||||||||||||||||||| |||||||| ||||||||||    
T  24484888 caaagcttttaatctcagccattggttttattttttccacatgtcacacatctataacttgaaat 24484824  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 311 - 378
Target Start/End: Complemental strand, 44516885 - 44516817
Alignment:
Q  311 ttttaatcacaaccattgattttatttttt-ccacatgtctcacatctaaaacttgaaatgaggtaaat 378  Q
    ||||||||||||| |||||||||||||||| ||||||||| ||||||||  |||| |||||||||||||    
T  44516885 ttttaatcacaactattgattttatttttttccacatgtcacacatctatcacttaaaatgaggtaaat 44516817  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 305 - 370
Target Start/End: Complemental strand, 39310501 - 39310436
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaatg 370  Q
    |||| ||||||||| || |||||| ||||||||||||||||||||  ||||||| |||||||||||    
T  39310501 caaagcttttaatctcagccattggttttattttttccacatgtcatacatctataacttgaaatg 39310436  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 305 - 378
Target Start/End: Original strand, 39311335 - 39311408
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaatgaggtaaat 378  Q
    |||| ||||||||| || | ||||||||||||||||||||||||| ||||||||  |||| ||||| |||||||    
T  39311335 caaagcttttaatctcagcaattgattttattttttccacatgtcacacatctatgacttaaaatggggtaaat 39311408  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 358
Target Start/End: Original strand, 44517450 - 44517497
Alignment:
Q  311 ttttaatcacaaccattgattttattttttccacatgtctcacatcta 358  Q
    ||||||||||| ||||| ||||||||||||||||||||| || |||||    
T  44517450 ttttaatcacacccattaattttattttttccacatgtcacatatcta 44517497  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 14088313 - 14088354
Alignment:
Q  309 ccttttaatcacaaccattgattttattttttccacatgtct 350  Q
    ||||||||| ||||||||||  ||||||||||||||||||||    
T  14088313 ccttttaattacaaccattggatttattttttccacatgtct 14088354  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 341
Target Start/End: Complemental strand, 36381186 - 36381157
Alignment:
Q  312 tttaatcacaaccattgattttattttttc 341  Q
    ||||||||||||||||||||||||||||||    
T  36381186 tttaatcacaaccattgattttattttttc 36381157  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 378
Target Start/End: Complemental strand, 120172 - 120105
Alignment:
Q  311 ttttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaatgaggtaaat 378  Q
    |||||||| |||||||| ||||||||||||||| ||||| | |||||| ||||||||||| |||||||    
T  120172 ttttaatctcaaccatttattttattttttccatatgtcacgcatctataacttgaaatggggtaaat 120105  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 43379448 - 43379502
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatctaa 359  Q
    |||||||||||||| ||||| ||| |||||||||| ||||||||| |||||||||    
T  43379448 caaaccttttaatcccaacccttgcttttatttttgccacatgtcacacatctaa 43379502  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 43378677 - 43378623
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatctaa 359  Q
    |||||||||||||| ||||| ||| |||||||||| |||| |||| |||||||||    
T  43378677 caaaccttttaatctcaacccttgcttttatttttgccacgtgtcacacatctaa 43378623  T

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Target: scaffold0151 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 20845 - 20792
Alignment:
Q  305 caaaccttttaatcacaaccattgattttattttttccacatgtctcacatcta 358  Q
    |||||||||||||| || |||||| |||||||||| ||||||||| ||||||||    
T  20845 caaaccttttaatctcagccattggttttatttttaccacatgtcacacatcta 20792  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 34260214 - 34260148
Alignment:
Q  312 tttaatcacaaccattgattttattttttccacatgtctcacatctaaaacttgaaatgaggtaaat 378  Q
    |||||||||||||||| | |||| ||||| |||||||| |||||| |  |||||||||| |||||||    
T  34260214 tttaatcacaaccattcaatttaatttttacacatgtcacacatccatgacttgaaatggggtaaat 34260148  T

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