View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3228_low_4 (Length: 415)
Name: NF3228_low_4
Description: NF3228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3228_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 9 - 398
Target Start/End: Original strand, 47678904 - 47679293
Alignment:
| Q |
9 |
gagatgaacccaaaaattacagactttggaatcgcaagattgtttgatgccaatcaaactcatggcatgacaaagaccgttgttggaacagtgtaagtat |
108 |
Q |
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| T |
47678904 |
gagatgaacccaaaaattacagattttggaatcgcaagattgtttgatgccaatcaaactcatggcatgacaaagaccgttgttggaacagtgtaagtat |
47679003 |
T |
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| Q |
109 |
taaggaaatgcttgaactaatgagatattcatcatttccaaataagaattttataacaaaaaacgtggaaaatgaaaatgatcggtcatcgaagatcgat |
208 |
Q |
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| T |
47679004 |
taaggaaatgcttgaactaatgagatattcatcatttccaaataagaattttataacaaaaaacgtggaaaatcaaaatgattggtcatcgaagatcgat |
47679103 |
T |
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| Q |
209 |
tgtcgtacatatctaatgattgagcataattattttgtgatacagtggatacatggctccggagtacattagacatggacaattctcagttaagtcagat |
308 |
Q |
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| T |
47679104 |
tgtcgttcatatctaatgattgagcataattgttttgtgatacagtggatacatggctccggagtacattagacatggacaattctcagttaagtcagat |
47679203 |
T |
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| Q |
309 |
gtgtttagttttggtgtaatcattttagaaattgtatgtggccagagaaacactgagattcgagatggggaaaatatagaggatctatta |
398 |
Q |
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| T |
47679204 |
gtgtttagttttggtgtaataattttagaaattgtatgtggccagagaaacactgagattcgagatggggaaaatatagaggatctatta |
47679293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 235 - 398
Target Start/End: Original strand, 47690457 - 47690620
Alignment:
| Q |
235 |
taattattttgtgatacagtggatacatggctccggagtacattagacatggacaattctcagttaagtcagatgtgtttagttttggtgtaatcatttt |
334 |
Q |
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| T |
47690457 |
taattgttttgacatacagcggatacatggctccagagtacattaaacatggagaattttcgatcaagtcagatgtgttcagttttggtgtaattatttt |
47690556 |
T |
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| Q |
335 |
agaaattgtatgtggccagagaaacactgagattcgagatggggaaaatatagaggatctatta |
398 |
Q |
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| T |
47690557 |
agaaattgtttgtggccggagaaacactaagatccgtgatggggacaatactgaggatctatta |
47690620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 47690192 - 47690306
Alignment:
| Q |
13 |
tgaacccaaaaattacagactttggaatcgcaagattgtttgatgccaatcaaactcatggcatgacaaagaccgttgttggaacagtgtaagtattaag |
112 |
Q |
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|||| |||||||||||||| ||||| || |||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| | | |
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| T |
47690192 |
tgaatccaaaaattacagattttggcattgcaaaattgtttgatgccaatcaaactcatggcatgacaagcaccgttattggaacttagtaagtacttaa |
47690291 |
T |
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| Q |
113 |
gaaatgcttgaacta |
127 |
Q |
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|||||||| |||||| |
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| T |
47690292 |
gaaatgctagaacta |
47690306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 6525563 - 6525607
Alignment:
| Q |
282 |
catggacaattctcagttaagtcagatgtgtttagttttggtgta |
326 |
Q |
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| T |
6525563 |
catggacaattttcagtgaagtcagatgtatttagttttggtgta |
6525607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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