View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3228_low_5 (Length: 388)
Name: NF3228_low_5
Description: NF3228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3228_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 45309147 - 45308779
Alignment:
| Q |
18 |
tcctcgagggccatcttgatacctaaattgttgctttcattattctccatagaactaagtttattactcatgtcattaaatgcgttttctacgctttcca |
117 |
Q |
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| T |
45309147 |
tcctcaagggccatcttgatacctaaattgttgctttcattattctccatagaactaagtttattactcatgtcattaaatgcgttttctacgctttcca |
45309048 |
T |
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| Q |
118 |
tcaagttcttcaccacaacatcaatataatctattgggtttgaggttttcacggggtagaggacatcatggcaaagtttatggtcatcagtgtctttgca |
217 |
Q |
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| T |
45309047 |
tcaagttcttcaccacaacatcaatataatctattgggtttgaggttttcacggggtagaggacatcatggcaaagtttatggtcatcagtgtctttgca |
45308948 |
T |
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| Q |
218 |
taaggacttgacaaccttattagggattctaaactcattgaaattatcactgtggacaataccaaaagtaatattaataatcaagatgaggaaaaaggac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45308947 |
taaggacttgacaaccttattagggattctaaactcattgaaattatcactgtggacaataccaaaagtaatattaataatcaagatgaggaaaaaggac |
45308848 |
T |
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| Q |
318 |
gagactagcaatgttttagttttcattatatatatcttagtatgttacaatcttttatttctatctgtg |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
45308847 |
gagactagcaatgttttagttttcattatatatatcttagtatgttacaaactattatttctatctgtg |
45308779 |
T |
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