View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3228_low_6 (Length: 324)
Name: NF3228_low_6
Description: NF3228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3228_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 31238460 - 31238170
Alignment:
| Q |
16 |
atatatacccaaacaatcatacagaaagtatttttctcttgctgcatcatttcttaatatacacctccatttcacatttccattcaaatatgaagctttt |
115 |
Q |
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| T |
31238460 |
atatatacacaaacaatcatacagaaagtatttttctcttgctgcatcctttcttaatatacacctccatttcacatttccattcaaatatgaagctttt |
31238361 |
T |
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| Q |
116 |
ccctctattattccatattttgcttctttccttttgttttatctcttcatttgctagtggagctactttgttagaagaagaaggtacgtaccttatattt |
215 |
Q |
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| T |
31238360 |
ccctctattattccatattttgcttctttccttttgttttatctcttcatttgctagtggaactactttgttagaagaagaaggtacgtaccttatattt |
31238261 |
T |
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| Q |
216 |
ctctcgcatagtacatcatcaccacaataaaacgttactattaccatcaaaggcatgagtttaactccacgtagcggcaatagaaccttat |
306 |
Q |
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| T |
31238260 |
ctctcgcatagtacatcatcaccacaataaaacgttactattaccaacaaaggcatgagtttaactccacgtagcagcaatagaaccttat |
31238170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 31248913 - 31248811
Alignment:
| Q |
117 |
cctctattattccatattttgcttctttccttttgttttatctcttcatttgctagtggagctactttgttagaagaagaaggtacgtaccttatatttc |
216 |
Q |
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| T |
31248913 |
cctctatcatttcatcttttgcttcttgctttttgtttgatctcttcatttgctagtggagctactttattagaagaagaaggtacgtaccttatatgtc |
31248814 |
T |
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| Q |
217 |
tct |
219 |
Q |
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||| |
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| T |
31248813 |
tct |
31248811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 31183365 - 31183286
Alignment:
| Q |
133 |
ttttgcttctttccttttgttttatctcttcatttgctagtggagctactttgttagaagaagaaggtacgtaccttata |
212 |
Q |
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| T |
31183365 |
ttttgtttctttccttttgtttgatctcttcatttgctagtggagctactctcttacaagaagaaggtatgtaccttata |
31183286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 31202391 - 31202312
Alignment:
| Q |
133 |
ttttgcttctttccttttgttttatctcttcatttgctagtggagctactttgttagaagaagaaggtacgtaccttata |
212 |
Q |
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| T |
31202391 |
ttttgtttctttccttttgtttgatctcttcatttgctagtggagctactctcttacaagaagaaggtatgtaccttata |
31202312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 31221944 - 31221865
Alignment:
| Q |
133 |
ttttgcttctttccttttgttttatctcttcatttgctagtggagctactttgttagaagaagaaggtacgtaccttata |
212 |
Q |
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||||| |||||||||||||||| ||||||||||||||||| ||||||||| | ||| |||||||||||| |||||||||| |
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| T |
31221944 |
ttttgtttctttccttttgtttgatctcttcatttgctagaggagctactctcttacaagaagaaggtatgtaccttata |
31221865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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