View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_high_1 (Length: 858)

Name: NF3229_high_1
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_high_1
NF3229_high_1
[»] chr2 (23 HSPs)
chr2 (511-849)||(28215611-28215949)
chr2 (18-392)||(28215161-28215532)
chr2 (18-274)||(28220830-28221095)
chr2 (514-738)||(32565382-32565609)
chr2 (514-738)||(32806567-32806794)
chr2 (514-738)||(32815004-32815231)
chr2 (514-738)||(32309226-32309453)
chr2 (511-677)||(28220447-28220610)
chr2 (83-222)||(32309680-32309819)
chr2 (541-738)||(32799640-32799840)
chr2 (656-788)||(28220224-28220356)
chr2 (83-233)||(32565015-32565165)
chr2 (83-233)||(32814638-32814788)
chr2 (98-233)||(32305536-32305671)
chr2 (271-389)||(28220694-28220809)
chr2 (752-849)||(32309070-32309167)
chr2 (752-849)||(32799899-32799996)
chr2 (752-844)||(32565668-32565760)
chr2 (752-844)||(32806853-32806945)
chr2 (752-844)||(32815290-32815382)
chr2 (514-555)||(32305344-32305385)
chr2 (809-849)||(28220187-28220227)
chr2 (807-836)||(28216011-28216040)
[»] chr6 (2 HSPs)
chr6 (517-753)||(301362-301596)
chr6 (752-844)||(301229-301321)


Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 511 - 849
Target Start/End: Original strand, 28215611 - 28215949
Alignment:
Q  511 ggaacctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatat 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28215611 ggaacctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaacagcggaacgaacaatat 28215710  T
Q  611 tctcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaataccagctaactt 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215711 tctcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaataccagctaactt 28215810  T
Q  711 gactgaacgaaaagaagtatgatagaaattaaatgaagttgttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttg 810  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215811 cactgaacgaaaagaagtatgatagaaattaaatgaagttgttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttg 28215910  T
Q  811 aagatgaagaatctcctcattttcttgatgatgatgatg 849  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28215911 aagatgaagaatctcctcattttcttgatgatgatgatg 28215949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 28215161 - 28215532
Alignment:
Q  18 caaaatgcatgagaatgattgagagcttttaagagaagaaatatgttaagaacaaaccnnnnnnncggaatctctcgctgcaagagcaagtatgtcagca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  28215161 caaaatgcatgagaatgattgagagcttttaagagaagaaatatgttaagaacaaaccaaaaaaacggaatctctcgctgcaagagcaagtatgtcagca 28215260  T
Q  118 caagagacaacgccgggacatgcttgttcgacctcctccttaatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcttgcttctcat 217  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  28215261 caagagacaacgccgggacatgcttgttccacctcctccttaatcaagtcaactttgtcaaaaccttttaatgtttgatttggaatagcctgcttctcat 28215360  T
Q  218 aggaaatgtttctatcctccaacaacaaggaagcatcacaaccctgattcagcaacagaaaatcaataccattattaaagcaagaagataatttagcaaa 317  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28215361 aggaaatgtttctatcctccaacaacaaggatgcatcacaaccctgattcagcaacagaaaatcaataccattatcaaagcaagaagataatttagcaaa 28215460  T
Q  318 gaaaaccaacaagaaatagaacacaaaaaatttaggatatctattagtattcactactatttcataaccaatcaa 392  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||   ||||||||||||||||||||    
T  28215461 gaaaaccaacaagaaatagaacacaaaaaatttaggatatttattggtattc---actatttcataaccaatcaa 28215532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 28221095 - 28220830
Alignment:
Q  18 caaaatgcatgagaatgattgagagcttttaagagaagaaatatgttaagaacaaaccnnnnnnncggaatctctcgctgcaagagcaagtatgtcagca 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  28221095 caaaatgcatgagaatgattgagaacttttaagagaagaaatatgttaagaacaaaccaaaaaaacggaatctctcgctgcaagagcaagtatgtcagca 28220996  T
Q  118 caagagacaacgccgggacatgcttgttcgacctcctccttaatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcttgcttctcat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  28220995 caagagacaacgccgggacatgcttgttcgacctcctccttaatcaagtcaactttgtcattacctttcaatgtttgatttggaatagcttgcttctcat 28220896  T
Q  218 aggaaatgtttcta---------tcctccaacaacaaggaagcatcacaaccctgattcagcaaca 274  Q
    ||||| ||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  28220895 aggaactgtttctatcaccattgtcctccaacaacaaggaagcatcacaaccctgattcagcaaca 28220830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 514 - 738
Target Start/End: Original strand, 32565382 - 32565609
Alignment:
Q  514 acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattct 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  |    
T  32565382 acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatctt 32565481  T
Q  614 cagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaactt 710  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  |    
T  32565482 cagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat 32565581  T
Q  711 gactgaacgaaaagaagtatgatagaaa 738  Q
    |||||||||||||||||||||| |||||    
T  32565582 gactgaacgaaaagaagtatgagagaaa 32565609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 514 - 738
Target Start/End: Original strand, 32806567 - 32806794
Alignment:
Q  514 acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattct 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  |    
T  32806567 acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatctt 32806666  T
Q  614 cagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaactt 710  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  |    
T  32806667 cagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat 32806766  T
Q  711 gactgaacgaaaagaagtatgatagaaa 738  Q
    |||||||||||||||||||||| |||||    
T  32806767 gactgaacgaaaagaagtatgagagaaa 32806794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 514 - 738
Target Start/End: Original strand, 32815004 - 32815231
Alignment:
Q  514 acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattct 613  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  |    
T  32815004 acctggatgaagcaatcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatctt 32815103  T
Q  614 cagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaactt 710  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  |    
T  32815104 cagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat 32815203  T
Q  711 gactgaacgaaaagaagtatgatagaaa 738  Q
    |||||||||||||||||||||| |||||    
T  32815204 gactgaacgaaaagaagtatgagagaaa 32815231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 514 - 738
Target Start/End: Complemental strand, 32309453 - 32309226
Alignment:
Q  514 acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattct 613  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| |||  |    
T  32309453 acctggatgaagcaatcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacattatctt 32309354  T
Q  614 cagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaactt 710  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  |    
T  32309353 cagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat 32309254  T
Q  711 gactgaacgaaaagaagtatgatagaaa 738  Q
    |||||||||||||||||||||| |||||    
T  32309253 gactgaacgaaaagaagtatgagagaaa 32309226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 511 - 677
Target Start/End: Complemental strand, 28220610 - 28220447
Alignment:
Q  511 ggaacctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatat 610  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||| | |||||||||||||||| ||||||||||||||||    
T  28220610 ggaacctggatgaagcaatcatgaaa--agagacgaagaagagaaggtgca-ggtctctatgattaaagtaaatatcggtaacagcggaacgaacaatat 28220514  T
Q  611 tctcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttc 677  Q
    ||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||    
T  28220513 tctcagcttgagggcaagaaaccttatagaaattatattgaagattggaaccatctctgattctttc 28220447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 83 - 222
Target Start/End: Complemental strand, 32309819 - 32309680
Alignment:
Q  83 cggaatctctcgctgcaagagcaagtatgtcagcacaagagacaacgccgggacatgcttgttcgacctcctccttaatcaagtcaactttgtcaaaacc 182  Q
    |||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32309819 cggaatctcttgcggcaagagcaagtatatcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatcaagtcaactttgtcaaaacc 32309720  T
Q  183 tttcaatgtttgatttggaatagcttgcttctcataggaa 222  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  32309719 tttcaatgtttgatttggaatagcctgcttctcataggaa 32309680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 541 - 738
Target Start/End: Original strand, 32799640 - 32799840
Alignment:
Q  541 agacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattctcagcttcagggcaagaatccttataga 640  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  ||||||| ||||||||||||| ||||||    
T  32799640 agacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctataga 32799739  T
Q  641 aattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaacttgactgaacgaaaagaagtatgatagaa 737  Q
    |||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  ||||||||||||||||||||||| ||||    
T  32799740 aattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaa 32799839  T
Q  738 a 738  Q
    |    
T  32799840 a 32799840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 656 - 788
Target Start/End: Complemental strand, 28220356 - 28220224
Alignment:
Q  656 tggaaccatctctgatactttcactgaaatcaaacggaaaaataccagctaacttgactgaacgaaaagaagtatgatagaaattaaatgaagttgttct 755  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28220356 tggaaccatctctgattctttgattgaaatcaaacggaaaaataccagctaacttcactgaacgaaaagaagtatgatagaaattaaatgaagttgttct 28220257  T
Q  756 gagagagagaagaacaggaaggactgcaatgaa 788  Q
    ||||||||||||||||| |||||||||||||||    
T  28220256 gagagagagaagaacagaaaggactgcaatgaa 28220224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 83 - 233
Target Start/End: Original strand, 32565015 - 32565165
Alignment:
Q  83 cggaatctctcgctgcaagagcaagtatgtcagcacaagagacaacgccgggacatgcttgttcgacctcctccttaatcaagtcaactttgtcaaaacc 182  Q
    |||||||||| || ||||||||||||||||||||||| || |||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  32565015 cggaatctcttgcggcaagagcaagtatgtcagcacacgacacaatgccgggacatgcttgttccacctcctccttgatcaagtcaactttgtcaaaacc 32565114  T
Q  183 tttcaatgtttgatttggaatagcttgcttctcataggaaatgtttctatc 233  Q
    |||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  32565115 tttcaatgtttgatttggaatagcctgcttctcataggaaccgtttctatc 32565165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 83 - 233
Target Start/End: Original strand, 32814638 - 32814788
Alignment:
Q  83 cggaatctctcgctgcaagagcaagtatgtcagcacaagagacaacgccgggacatgcttgttcgacctcctccttaatcaagtcaactttgtcaaaacc 182  Q
    ||||||||||  | |||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||    
T  32814638 cggaatctcttacggcaagagcaagtatgtcagcacaagaaacaacgccgggacatgcttgctccacctcttccttgatcaagtcaactttgtcaaaacc 32814737  T
Q  183 tttcaatgtttgatttggaatagcttgcttctcataggaaatgtttctatc 233  Q
    |||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  32814738 tttcaatgtttgatttggaatagcctgcttctcataggaaccgtttctatc 32814788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 98 - 233
Target Start/End: Complemental strand, 32305671 - 32305536
Alignment:
Q  98 caagagcaagtatgtcagcacaagagacaacgccgggacatgcttgttcgacctcctccttaatcaagtcaactttgtcaaaacctttcaatgtttgatt 197  Q
    |||||||||||||||||| |||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32305671 caagagcaagtatgtcagtacaagacacaacgccgggacatgcttgatccacctcctccttgatcaagtcaactttgtcaaaacctttcaatgtttgatt 32305572  T
Q  198 tggaatagcttgcttctcataggaaatgtttctatc 233  Q
    ||||||||| |||||||||||||||  |||||||||    
T  32305571 tggaatagcctgcttctcataggaaccgtttctatc 32305536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 271 - 389
Target Start/End: Complemental strand, 28220809 - 28220694
Alignment:
Q  271 aacagaaaatcaataccattattaaagcaagaagataatttagcaaagaaaaccaacaagaaatagaacacaaaaaatttaggatatctattagtattca 370  Q
    |||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||     
T  28220809 aacagaaaatgaataccaatatcaaagcaagaaaataatttagcaaagaaaaccaacaagaatcagaacacaaaaaatttaggatatctattagtattc- 28220711  T
Q  371 ctactatttcataaccaat 389  Q
      |||||||||||||||||    
T  28220710 --actatttcataaccaat 28220694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 752 - 849
Target Start/End: Complemental strand, 32309167 - 32309070
Alignment:
Q  752 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttcttgatgatgatgatg 849  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  32309167 ttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttcttgatgatgaagatg 32309070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 752 - 849
Target Start/End: Original strand, 32799899 - 32799996
Alignment:
Q  752 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttcttgatgatgatgatg 849  Q
    ||||||||||||||||||||||||||| | ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  32799899 ttctgagagagagaagaacaggaaggaatacaatgaatgcaactatgaaccatgggttgaagatgaagaatctcctcattttcttgatgatgaagatg 32799996  T

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Target: chr2; HSP #18
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 752 - 844
Target Start/End: Original strand, 32565668 - 32565760
Alignment:
Q  752 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttcttgatgatga 844  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  32565668 ttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttcttgatgatga 32565760  T

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Target: chr2; HSP #19
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 752 - 844
Target Start/End: Original strand, 32806853 - 32806945
Alignment:
Q  752 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttcttgatgatga 844  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  32806853 ttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttcttgatgatga 32806945  T

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Target: chr2; HSP #20
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 752 - 844
Target Start/End: Original strand, 32815290 - 32815382
Alignment:
Q  752 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttcttgatgatga 844  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  32815290 ttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttcttgatgatga 32815382  T

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Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Complemental strand, 32305385 - 32305344
Alignment:
Q  514 acctggatgaagcaatcatgaaagaagagacgaagaagagaa 555  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32305385 acctggatgaagcaatcatgaaagaagagacgaagaagagaa 32305344  T

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Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 809 - 849
Target Start/End: Complemental strand, 28220227 - 28220187
Alignment:
Q  809 tgaagatgaagaatctcctcattttcttgatgatgatgatg 849  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  28220227 tgaagatgaagattctcctcattttcttgatgataatgatg 28220187  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 807 - 836
Target Start/End: Original strand, 28216011 - 28216040
Alignment:
Q  807 gttgaagatgaagaatctcctcattttctt 836  Q
    ||||||||||||||||||||||||||||||    
T  28216011 gttgaagatgaagaatctcctcattttctt 28216040  T

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Target: chr6 (Bit Score: 126; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 517 - 753
Target Start/End: Complemental strand, 301596 - 301362
Alignment:
Q  517 tggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattctcag 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||| |||||||||  ||||    
T  301596 tggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaggtagatatcggtaacagcggaaggaacaatatcttcag 301497  T
Q  617 cttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaataccagctaacttgactga 716  Q
    ||| ||||| ||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||   |||||| |||||||    
T  301496 cttgagggctagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctaacgtgactga 301397  T
Q  717 acgaaaagaagtatgatagaaattaaatgaagttgtt 753  Q
    || |||||  |||||| |||||  | |||||||||||    
T  301396 accaaaag--gtatgagagaaagaagatgaagttgtt 301362  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 752 - 844
Target Start/End: Complemental strand, 301321 - 301229
Alignment:
Q  752 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttcttgatgatga 844  Q
    |||||| |||||||||||| ||||||||| ||||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||||||    
T  301321 ttctgaaagagagaagaacgggaaggactacaatgaatgcaactatgaaccatgggttgaagatgaagaatcttctcattttcttgatgatga 301229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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