View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_100 (Length: 274)
Name: NF3229_high_100
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_100 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 32954642 - 32954764
Alignment:
| Q |
16 |
caatgtcctgcaattgttcttggtacgttgtcctctacaaggaagtccctgaatatgccttattcctctgtaacactgaatctccttcaacctctttata |
115 |
Q |
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| T |
32954642 |
caatgtcctgcaattgttcttggtacgttgtcctctacaaggaagtccctgaatatgccttattcctctgtaacactgaatctccttcaacctctttata |
32954741 |
T |
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| Q |
116 |
ttaagtgcattaaaccttctctg |
138 |
Q |
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| T |
32954742 |
ttaagtgcattaaaccttctctg |
32954764 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 32954844 - 32954881
Alignment:
| Q |
228 |
accaaatctccttcagtcatgtatttgttaacttcatc |
265 |
Q |
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||||||||||||||| |||||||||||||||||||||| |
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| T |
32954844 |
accaaatctccttcaatcatgtatttgttaacttcatc |
32954881 |
T |
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