View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_104 (Length: 264)
Name: NF3229_high_104
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_104 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 45519167 - 45519414
Alignment:
| Q |
16 |
atggtgatgatttaaagagagctaagagagaagttttggacttgaccatgtgttcatccattgatgggttttgaagaatgaagtttttatgatcacaagt |
115 |
Q |
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| T |
45519167 |
atggtgatgatttaaagagagctaagagagaagttttggacttgaccatgtgttcatccattgatgggttttgaagaatgaagtttttatgatcacaagt |
45519266 |
T |
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| Q |
116 |
taacatggaaagtgaagttttgttttcaacattttctcaataaaatgtgaagtgtaatggtgtaataaagtttcttccatggaaagatcaggttaataga |
215 |
Q |
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| T |
45519267 |
taacatggaaagtgaagttttgttttcaacattttctcaataaaatgtgaagtgtaatggtgtaataaagtttcttccatggaaagatcaagttaataga |
45519366 |
T |
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| Q |
216 |
annnnnnnnnaaaaggagctagcatagagtcaattgaataattgcattc |
264 |
Q |
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| T |
45519367 |
a-ttttttttaaaaggagctagcatagagtcaattgaataattgcattc |
45519414 |
T |
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