View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_109 (Length: 257)
Name: NF3229_high_109
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_109 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 258386 - 258611
Alignment:
| Q |
17 |
cacagagcctcccttattgtttaggaagaaacctatatatatgcaagtgacaaacttagtttctttgaagttttagttttactatgatgcttgttgatga |
116 |
Q |
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| T |
258386 |
cacagagcctcccttattgtttaggaagaaacctatat----gcaagtgacaaacttagtttctttgaagttttagttt-actatgatgcttgttgatga |
258480 |
T |
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| Q |
117 |
ttaacaatatgcttgctctgattccctgctattccatttgacaaagtatattaaactacatttcgtgttactggaaggccctaacgctctcaaactcgga |
216 |
Q |
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| T |
258481 |
ttaacaatatgcttgctctgattccctgctattccatttgac----------aaactacatttcgtgttactggaaggccctaacgctctcaaactcggc |
258570 |
T |
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| Q |
217 |
atgtgtagatcctatgatttactcttgaattttgtcaaagg |
257 |
Q |
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| T |
258571 |
atgtgtagatcctatgatttactcttgaattttgtcaaagg |
258611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 657535 - 657310
Alignment:
| Q |
17 |
cacagagcctcccttattgtttaggaagaaacctatatatatgcaagtgacaaacttagtttctttgaagttttagttttactatgatgcttgttgatga |
116 |
Q |
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| T |
657535 |
cacagagcctcccttattgtttaggaagaaacctatat----gcaagtgacaaacttagtttctttgaagttttagttt-actatgatgcttgttgatga |
657441 |
T |
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| Q |
117 |
ttaacaatatgcttgctctgattccctgctattccatttgacaaagtatattaaactacatttcgtgttactggaaggccctaacgctctcaaactcgga |
216 |
Q |
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| T |
657440 |
ttaacaatatgcttgctctgattccctgctattccatttgac----------aaactacatttcgtgttactggaaggccctaacgctctcaaactcggc |
657351 |
T |
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| Q |
217 |
atgtgtagatcctatgatttactcttgaattttgtcaaagg |
257 |
Q |
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| T |
657350 |
atgtgtagatcctatgatttactcttgaattttgtcaaagg |
657310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 843270 - 843045
Alignment:
| Q |
17 |
cacagagcctcccttattgtttaggaagaaacctatatatatgcaagtgacaaacttagtttctttgaagttttagttttactatgatgcttgttgatga |
116 |
Q |
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| T |
843270 |
cacagagcctcccttattgtttaggaagaaacctatat----gcaagtgacaaacttagtttctttgaagttttagttt-actatgatgcttgttgatga |
843176 |
T |
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| Q |
117 |
ttaacaatatgcttgctctgattccctgctattccatttgacaaagtatattaaactacatttcgtgttactggaaggccctaacgctctcaaactcgga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
843175 |
ttaacaatatgcttgctctgattccctgctattccatttgac----------aaactacatttcgtgttactggaaggccctaacgctctcaaactcggc |
843086 |
T |
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| Q |
217 |
atgtgtagatcctatgatttactcttgaattttgtcaaagg |
257 |
Q |
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| T |
843085 |
atgtgtagatcctatgatttactcttgaattttgtcaaagg |
843045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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