View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_110 (Length: 256)
Name: NF3229_high_110
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_110 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 141 - 256
Target Start/End: Original strand, 34741414 - 34741529
Alignment:
| Q |
141 |
aactagctaacaaacttttaaaagtaaaaccaaccaatgtaactaacttttcttatgattatggattaatcatctaatactttcatcaattacaaaggag |
240 |
Q |
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| T |
34741414 |
aactagctaacaaacttttaaaagtaaaaccaactaatgtaactaacttttcttatgattatggattaatcatctaatactttcatctattacaaaggag |
34741513 |
T |
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| Q |
241 |
gcactaacatggtggc |
256 |
Q |
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| T |
34741514 |
gcactaacatggtggc |
34741529 |
T |
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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 34741357 - 34741411
Alignment:
| Q |
12 |
agagagaatgcgaaaggtggttatggatggagaaagagttattggaagtttgtta |
66 |
Q |
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| T |
34741357 |
agagagaatgcgaaaggtggttatggatggagaaagagttattggaagtttgtta |
34741411 |
T |
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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 50 - 219
Target Start/End: Complemental strand, 36020003 - 36019834
Alignment:
| Q |
50 |
ttattggaagtttgtt-atcttattgattaatgaaaatagaagagtacaatctatttatatacatttaaccttggagagcaagttattaggta-actagc |
147 |
Q |
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| T |
36020003 |
ttattggaggtttgtttatttcattgattaatgaaattaggagagtacaatctatttatatacacataac-ttggagtgcaagttattaggttgactaac |
36019905 |
T |
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| Q |
148 |
taacaaacttttaaaagtaaaaccaaccaatgtaactaacttttcttatgattatggattaatcatctaata |
219 |
Q |
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| T |
36019904 |
taacaaactttttaa-gtaaaaccaactaatgtaattaacttctcctatgattatagattaatcatctaata |
36019834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 217
Target Start/End: Original strand, 31759827 - 31759984
Alignment:
| Q |
58 |
agtttgttatcttattgattaatgaaaatagaagagtacaatctatttatatacatttaaccttggagagcaagttattaggtaactagctaacaaactt |
157 |
Q |
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| T |
31759827 |
agtttgttatttcattgattaatgaaaatagatgattaacaactatttatatacacataa-cttgtagtgcaagtcatttagtaaataactaacaaactt |
31759925 |
T |
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| Q |
158 |
ttaaaagtaaaaccaaccaatgtaactaacttttcttatgattatggattaatcatctaa |
217 |
Q |
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| T |
31759926 |
tt-aaagtaaagctaattatttaaactaacttcactaatgattatggattaatcatctaa |
31759984 |
T |
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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 29149993 - 29150147
Alignment:
| Q |
12 |
agagagaatgcgaaaggtggttatggatggagaaagagtt-attggaagtttgttatctt-attgattaatgaaaatagaagagtacaatctatttatat |
109 |
Q |
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| T |
29149993 |
agagagaatgaggaaggtggttatggagaaagaaaaaatttattgggagcttgtttttttcattgattaatgaaaatagaagagtacaatctatttatat |
29150092 |
T |
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| Q |
110 |
acatttaaccttggagagcaagttattaggtaactagctaacaaacttttaaaagt |
165 |
Q |
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| T |
29150093 |
acacataa-cttggagtacaaattatcaggtaactagctaacaaattttcaaaagt |
29150147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 2799252 - 2799087
Alignment:
| Q |
61 |
ttgttatcttattgattaatgaaaatagaagagtacaatctatttatatacatttaaccttggagagcaagttattaggtaactagctaacaaactttta |
160 |
Q |
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| T |
2799252 |
ttgttatttcattgattaatgaaaatagaacaatacaatcaatttatatacacttaa-cttgtaatgcaagttattaggtaactaactaac---ttttca |
2799157 |
T |
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| Q |
161 |
aaagtaaaa-ccaaccaatgtaactaactt------ttcttatgattatggattaatcatctaatacttt |
223 |
Q |
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| T |
2799156 |
aaagtaaaatcaaactaatgcaactaatttcacttatgattatgattatggattaatcatctaatacttt |
2799087 |
T |
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