View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_high_12 (Length: 478)

Name: NF3229_high_12
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_high_12
NF3229_high_12
[»] chr7 (6 HSPs)
chr7 (12-285)||(6350621-6350898)
chr7 (430-478)||(6350466-6350514)
chr7 (425-473)||(49010640-49010688)
chr7 (425-477)||(28837018-28837070)
chr7 (428-478)||(36659070-36659120)
chr7 (424-472)||(33686461-33686509)
[»] chr2 (6 HSPs)
chr2 (99-204)||(35081986-35082093)
chr2 (16-75)||(35084185-35084244)
chr2 (443-478)||(18829122-18829157)
chr2 (424-466)||(12756065-12756107)
chr2 (425-478)||(37621905-37621958)
chr2 (424-476)||(7071750-7071802)
[»] chr3 (5 HSPs)
chr3 (143-214)||(11021744-11021815)
chr3 (424-478)||(5136191-5136245)
chr3 (425-466)||(11017497-11017538)
chr3 (424-473)||(29564382-29564431)
chr3 (442-478)||(19814987-19815023)
[»] chr5 (4 HSPs)
chr5 (424-478)||(15959160-15959214)
chr5 (424-462)||(23034862-23034900)
chr5 (424-478)||(30297188-30297242)
chr5 (427-478)||(8788726-8788777)
[»] chr8 (4 HSPs)
chr8 (424-473)||(32539693-32539742)
chr8 (174-214)||(6290214-6290254)
chr8 (424-478)||(3436131-3436185)
chr8 (425-478)||(33947340-33947393)
[»] chr4 (7 HSPs)
chr4 (439-477)||(3222232-3222270)
chr4 (424-478)||(13390662-13390716)
chr4 (424-478)||(26546534-26546588)
chr4 (424-478)||(28876529-28876583)
chr4 (424-478)||(44157522-44157576)
chr4 (424-478)||(50204302-50204356)
chr4 (422-478)||(56226192-56226248)
[»] chr1 (2 HSPs)
chr1 (424-478)||(17446191-17446245)
chr1 (426-478)||(3829883-3829935)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 6350898 - 6350621
Alignment:
Q  12 atgaagagaatagaagagggaaaattcattatttcactaactgagtttggtacaatggttaagc--ttagctatcatagactaactgcactctatcataa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||  ||| ||| ||||||||||||||||||||||||||    
T  6350898 atgaagagaatagaagagggaaaattcattatttcactaactgagtttggtaaaatgcttaagcgtttacctaccatagactaactgcactctatcataa 6350799  T
Q  110 ctctctctaactgccataacagaatctaa--ttatgtggcaagttacttagagctatgtcaagttacttgcttctcaagtaatctttcttcttcttccat 207  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350798 ctctctctaactgccataacagaatctaagcttatgtggcaagttagttagagctatgtcaagttacttgcttctcaagtaatctttcttcttcttccat 6350699  T
Q  208 tcttaacggttacaacaaaggttaaaaagagagagttggtaataaagaaattccattttctccatcgttttccctctt 285  Q
    ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6350698 tcttaacggttacaacagaggttaaagagagagagttagtaataaagaaattccattttctccatcgttttccctctt 6350621  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 430 - 478
Target Start/End: Complemental strand, 6350514 - 6350466
Alignment:
Q  430 ttggactttacgtatattatagggtcataaataataagaatctcaaatt 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350514 ttggactttacgtatattatagggtcataaataataagaatctcaaatt 6350466  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 473
Target Start/End: Original strand, 49010640 - 49010688
Alignment:
Q  425 cttttttggactttacgtatattatagggtcataaataataagaatctc 473  Q
    ||||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  49010640 cttttttggacttcacgtatattacagggtcataaataataaaaatctc 49010688  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 477
Target Start/End: Complemental strand, 28837070 - 28837018
Alignment:
Q  425 cttttttggactttacgtatattatagggtcataaataataagaatctcaaat 477  Q
    ||||| ||||||| || ||||||| ||||||||||||||||||||| ||||||    
T  28837070 cttttctggacttcacatatattacagggtcataaataataagaatatcaaat 28837018  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 478
Target Start/End: Original strand, 36659070 - 36659120
Alignment:
Q  428 ttttggactttacgtatattatagggtcataaataataagaatctcaaatt 478  Q
    ||||||||||  ||||||||| ||||| ||||||||||| |||||||||||    
T  36659070 ttttggacttcgcgtatattacagggttataaataataaaaatctcaaatt 36659120  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 472
Target Start/End: Original strand, 33686461 - 33686509
Alignment:
Q  424 gcttttttggactttacgtatattatagggtcataaataataagaatct 472  Q
    ||||||| |||||| |||||||||| ||||| ||||||||||| |||||    
T  33686461 gctttttaggacttcacgtatattacagggttataaataataaaaatct 33686509  T

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Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 35082093 - 35081986
Alignment:
Q  99 ctctatcataactctctctaactgccataacagaatctaa--ttatgtggcaagttacttagagctatgtcaagttacttgcttctcaagtaatctttct 196  Q
    ||||||||||  ||||||||||||||||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35082093 ctctatcatagttctctctaactgccatagcagaatctaagcttatgtggcaagttagttagagctatgtcaagttacttgcttctcaagtaatctttct 35081994  T
Q  197 tcttcttc 204  Q
    ||||||||    
T  35081993 tcttcttc 35081986  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 35084244 - 35084185
Alignment:
Q  16 agagaatagaagagggaaaattcattatttcactaactgagtttggtacaatggttaagc 75  Q
    |||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  35084244 agagaatagaagagagaaaattcattatttcactaaccgagtttgttacaatggttaagc 35084185  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 478
Target Start/End: Complemental strand, 18829157 - 18829122
Alignment:
Q  443 atattatagggtcataaataataagaatctcaaatt 478  Q
    |||||||||||||| |||||||||||||||||||||    
T  18829157 atattatagggtcaaaaataataagaatctcaaatt 18829122  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 466
Target Start/End: Complemental strand, 12756107 - 12756065
Alignment:
Q  424 gcttttttggactttacgtatattatagggtcataaataataa 466  Q
    ||||||||||||||  ||||||||||||||| |||||||||||    
T  12756107 gcttttttggacttcgcgtatattatagggttataaataataa 12756065  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 37621905 - 37621958
Alignment:
Q  425 cttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 478  Q
    |||||||||||   |||||||||||||||||| || ||| ||||||||||||||    
T  37621905 cttttttggaccacacgtatattatagggtcaaaagtaagaagaatctcaaatt 37621958  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 476
Target Start/End: Complemental strand, 7071802 - 7071750
Alignment:
Q  424 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaa 476  Q
    ||||||||||||||  |||||||||  |||| ||||||||||| |||||||||    
T  7071802 gcttttttggacttcgcgtatattagtgggttataaataataaaaatctcaaa 7071750  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 11021744 - 11021815
Alignment:
Q  143 gtggcaagttacttagagctatgtcaagttacttgcttctcaagtaatctttcttcttcttccattcttaac 214  Q
    ||||||||||  |||||||||||||| |||||||||| ||||||||||||| | ||||||||||||||||||    
T  11021744 gtggcaagtttgttagagctatgtcaggttacttgctcctcaagtaatcttccatcttcttccattcttaac 11021815  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 478
Target Start/End: Original strand, 5136191 - 5136245
Alignment:
Q  424 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 478  Q
    ||||||||||||||  ||||||||||||||| ||||||||||| |||||| ||||    
T  5136191 gcttttttggacttcgcgtatattatagggttataaataataaaaatctcgaatt 5136245  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 466
Target Start/End: Complemental strand, 11017538 - 11017497
Alignment:
Q  425 cttttttggactttacgtatattatagggtcataaataataa 466  Q
    ||||||||||||| |||||||||||||||| |||||||||||    
T  11017538 cttttttggacttcacgtatattatagggttataaataataa 11017497  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 473
Target Start/End: Complemental strand, 29564431 - 29564382
Alignment:
Q  424 gcttttttggactttacgtatattatagggtcataaataataagaatctc 473  Q
    |||||||||||||| |||||||| | | ||||||||||||||| ||||||    
T  29564431 gcttttttggacttcacgtatatgacatggtcataaataataataatctc 29564382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 478
Target Start/End: Original strand, 19814987 - 19815023
Alignment:
Q  442 tatattatagggtcataaataataagaatctcaaatt 478  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  19814987 tatattatagggtcaaaaataacaagaatctcaaatt 19815023  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 478
Target Start/End: Complemental strand, 15959214 - 15959160
Alignment:
Q  424 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 478  Q
    ||||||||||||||  ||||||||||||||| ||||||||||| |||||| ||||    
T  15959214 gcttttttggacttcgcgtatattatagggttataaataataaaaatctcgaatt 15959160  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 462
Target Start/End: Original strand, 23034862 - 23034900
Alignment:
Q  424 gcttttttggactttacgtatattatagggtcataaata 462  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  23034862 gcttttttggacttcacgtatattatagggtcataaata 23034900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 478
Target Start/End: Complemental strand, 30297242 - 30297188
Alignment:
Q  424 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 478  Q
    ||||||||||||||||||||||| | | | |||||||||||||||||||| ||||    
T  30297242 gcttttttggactttacgtatatcacatgatcataaataataagaatctcgaatt 30297188  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 478
Target Start/End: Original strand, 8788726 - 8788777
Alignment:
Q  427 tttttggactttacgtatattatagggtcataaataataagaatctcaaatt 478  Q
    |||||||||||||  |||||||||| || | |||||||||||||||||||||    
T  8788726 tttttggactttaactatattatagagtaaaaaataataagaatctcaaatt 8788777  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 424 - 473
Target Start/End: Complemental strand, 32539742 - 32539693
Alignment:
Q  424 gcttttttggactttacgtatattatagggtcataaataataagaatctc 473  Q
    |||||||||||||| |||||| ||| ||||| ||||||||||||||||||    
T  32539742 gcttttttggacttcacgtattttacagggtgataaataataagaatctc 32539693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 6290214 - 6290254
Alignment:
Q  174 cttgcttctcaagtaatctttcttcttcttccattcttaac 214  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  6290214 cttgctcctcaagtaatcttccttcttcttccattcttaac 6290254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 478
Target Start/End: Original strand, 3436131 - 3436185
Alignment:
Q  424 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 478  Q
    ||||||||||||||| ||||||||| | ||| ||||||||||| |||||| ||||    
T  3436131 gcttttttggactttgcgtatattacaaggttataaataataaaaatctcgaatt 3436185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Complemental strand, 33947393 - 33947340
Alignment:
Q  425 cttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 478  Q
    ||||||||||||| || ||||||||||||||| | |||  ||||||||||||||    
T  33947393 cttttttggacttcacatatattatagggtcaaacatatgaagaatctcaaatt 33947340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 439 - 477
Target Start/End: Original strand, 3222232 - 3222270
Alignment:
Q  439 acgtatattatagggtcataaataataagaatctcaaat 477  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  3222232 acgtatattatagggtcaaaaataagaagaatctcaaat 3222270  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 478
Target Start/End: Complemental strand, 13390716 - 13390662
Alignment:
Q  424 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 478  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||    
T  13390716 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaatt 13390662  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 478
Target Start/End: Complemental strand, 26546588 - 26546534
Alignment:
Q  424 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 478  Q
    |||||||||||||| |  ||||||| ||||||  |||||||||||||||||||||    
T  26546588 gcttttttggacttcaactatattacagggtccaaaataataagaatctcaaatt 26546534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 478
Target Start/End: Complemental strand, 28876583 - 28876529
Alignment:
Q  424 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 478  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||    
T  28876583 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaatt 28876529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 478
Target Start/End: Original strand, 44157522 - 44157576
Alignment:
Q  424 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 478  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||    
T  44157522 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaatt 44157576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 478
Target Start/End: Complemental strand, 50204356 - 50204302
Alignment:
Q  424 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 478  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||    
T  50204356 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaatt 50204302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 56226192 - 56226248
Alignment:
Q  422 tcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 478  Q
    ||||||||||||||||  ||||||||||  ||||  ||||||||||||| |||||||    
T  56226192 tcgcttttttggacttctcgtatattatttggtctcaaataataagaatatcaaatt 56226248  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 478
Target Start/End: Original strand, 17446191 - 17446245
Alignment:
Q  424 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 478  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||    
T  17446191 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaatt 17446245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 478
Target Start/End: Original strand, 3829883 - 3829935
Alignment:
Q  426 ttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 478  Q
    ||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||    
T  3829883 ttttttggacttcgcgtatattacagggttataaataataaaaatctcgaatt 3829935  T

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