View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_122 (Length: 250)
Name: NF3229_high_122
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_122 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 4821924 - 4822167
Alignment:
| Q |
7 |
gtgatatgaagaaaaagaagctttgcagcctgcaatcagcaccaccattgtattatccaatacttccatcgtcgcgacccccgccatcggcagctgcttg |
106 |
Q |
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| T |
4821924 |
gtgataagaagaaaatgaagctttgcagcctgcaatcagcaccaccattgtattatccaatacttccatcgtcgcgacccccgccatcggcagctgcttg |
4822023 |
T |
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| Q |
107 |
tgcccctgccaggaccaccttcaaaagctgcagctgccttacatgccccnnnnnnnttgcatcatctcaatctcaagtcacaacctacatatccaacacc |
206 |
Q |
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| T |
4822024 |
tgccccttccaggaccaccttcaaaagcagcagctgccttacatgccccaaaaaaattgcatcatctcaatctcaagtcacaacctacatatccaacacc |
4822123 |
T |
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| Q |
207 |
aatgcgtgctttgcggaacaattggtagtcccacatcgaaagct |
250 |
Q |
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| T |
4822124 |
tatgcgtgctttgcggaacaattggtagtcccacatcgaaagct |
4822167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 4811942 - 4812010
Alignment:
| Q |
7 |
gtgatatgaagaaaaagaagctttgcagcctgcaatcagcaccaccattgtattatccaatacttccat |
75 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4811942 |
gtgataagaagaaaaagaagctttgcagcctgcaatcagcaccaccattgtattatccaatacttccat |
4812010 |
T |
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