View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_high_123 (Length: 250)

Name: NF3229_high_123
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_high_123
NF3229_high_123
[»] chr3 (13 HSPs)
chr3 (1-235)||(17256986-17257220)
chr3 (1-235)||(55094048-55094282)
chr3 (1-222)||(50380486-50380707)
chr3 (1-235)||(5635752-5635986)
chr3 (36-235)||(51225380-51225578)
chr3 (36-232)||(35494604-35494798)
chr3 (36-235)||(32771512-32771711)
chr3 (36-217)||(36316758-36316939)
chr3 (36-165)||(33446760-33446889)
chr3 (36-142)||(49002118-49002224)
chr3 (138-235)||(2182202-2182299)
chr3 (55-145)||(10730789-10730879)
chr3 (1-88)||(2182297-2182384)
[»] chr7 (3 HSPs)
chr7 (5-235)||(30504061-30504291)
chr7 (36-235)||(42437430-42437630)
chr7 (36-235)||(24279026-24279225)
[»] chr5 (4 HSPs)
chr5 (1-235)||(26365492-26365726)
chr5 (36-235)||(38163135-38163334)
chr5 (1-235)||(38973814-38974048)
chr5 (36-235)||(4887842-4888041)
[»] chr6 (5 HSPs)
chr6 (1-235)||(4792685-4792919)
chr6 (36-235)||(29873501-29873700)
chr6 (1-235)||(22516903-22517137)
chr6 (36-235)||(2017931-2018130)
chr6 (3-155)||(2173445-2173591)
[»] chr2 (9 HSPs)
chr2 (36-235)||(11364282-11364481)
chr2 (1-235)||(44077953-44078187)
chr2 (1-234)||(23048689-23048921)
chr2 (36-235)||(8667035-8667234)
chr2 (38-235)||(43890562-43890759)
chr2 (1-235)||(21632199-21632428)
chr2 (1-142)||(28732754-28732888)
chr2 (136-205)||(28720811-28720880)
chr2 (38-83)||(34055832-34055877)
[»] chr1 (11 HSPs)
chr1 (1-235)||(50877294-50877528)
chr1 (36-238)||(4475660-4475862)
chr1 (36-235)||(49695816-49696015)
chr1 (36-235)||(21259462-21259660)
chr1 (44-235)||(51548817-51549008)
chr1 (65-235)||(50503891-50504061)
chr1 (36-205)||(39277418-39277587)
chr1 (1-155)||(7057326-7057474)
chr1 (36-72)||(50503830-50503866)
chr1 (1-30)||(39277370-39277399)
chr1 (1-30)||(49695768-49695797)
[»] chr8 (5 HSPs)
chr8 (36-235)||(45309079-45309278)
chr8 (36-235)||(8951775-8951977)
chr8 (36-235)||(12279750-12279949)
chr8 (1-235)||(42074716-42074947)
chr8 (59-235)||(8348512-8348688)
[»] chr4 (9 HSPs)
chr4 (38-235)||(38828948-38829147)
chr4 (1-235)||(6033338-6033572)
chr4 (1-232)||(51543335-51543563)
chr4 (36-235)||(33167527-33167726)
chr4 (1-235)||(29775712-29775946)
chr4 (36-235)||(8143839-8144038)
chr4 (36-235)||(53060810-53061007)
chr4 (36-235)||(1139539-1139722)
chr4 (36-82)||(44271547-44271593)
[»] scaffold0854 (1 HSPs)
scaffold0854 (36-235)||(2798-2977)
[»] scaffold0286 (1 HSPs)
scaffold0286 (3-155)||(20449-20596)
[»] scaffold0016 (1 HSPs)
scaffold0016 (174-238)||(200903-200967)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 17256986 - 17257220
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgag 100  Q
    |||||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  17256986 ctccaaaaccctttgttccaaaatcttgaagctttatcaccaccatggatttgctccgattgaatctctctcgtattcaaattgtaaccagaaacacgag 17257085  T
Q  101 gaagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattc 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| |    
T  17257086 gaagtaaagtggcattctaatttttcaaacacaggtaaactagttgtagcatttaggaacagagttgatgaggaaatataaatagaaactatcattatac 17257185  T
Q  201 ttttattaatgtaaacaatatgttattgttctgat 235  Q
    ||||| ||||||||||| ||| | |||||||||||    
T  17257186 ttttaataatgtaaacattatttgattgttctgat 17257220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 55094282 - 55094048
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgag 100  Q
    |||||||| ||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  55094282 ctccaaaatcctttgttccaaaatcttgaagctttatcaccaccatggatttgctccgattgaatctctctcgtattcgaattgtaaccagaaacacgag 55094183  T
Q  101 gaagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattc 200  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |    
T  55094182 gaagtaaagtgacattctaatttttcaaacacatgtaaactagttgtagcattcatgaacagagttgatgaggaaatataaatagaaactatcattatac 55094083  T
Q  201 ttttattaatgtaaacaatatgttattgttctgat 235  Q
    ||||| ||||||||||| ||||| |||||||||||    
T  55094082 ttttaataatgtaaacagtatgtgattgttctgat 55094048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 50380486 - 50380707
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgag 100  Q
    |||||||||||||||||||||||| |||||   |||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||    
T  50380486 ctccaaaaccctttgttccaaaatcttgaagctttatcaccaccatggatttgctccgattgaatatctctcgtattcgaattgtgaccagaaacacgag 50380585  T
Q  101 gaagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattc 200  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| |    
T  50380586 gaagtaaaatggcattctaatttttcaaacacaggtaaactagttgtaacattcaggaacagagttgatgaggaaatataaatagaaactatcattatac 50380685  T
Q  201 ttttattaatgtaaacaatatg 222  Q
    ||||| ||||||||||| ||||    
T  50380686 ttttaataatgtaaacagtatg 50380707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 5635752 - 5635986
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgag 100  Q
    |||||||||||||||||| ||||| |||||   |||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5635752 ctccaaaaccctttgttctaaaatcttgaagctttatcaccactatgaatttgctccgattgaatctctctcgtattcgaattgtaaccagaaacacgag 5635851  T
Q  101 gaagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattc 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| || |  || ||||||||||| | ||||||||||||||||| |||||| |    
T  5635852 gaagtaaagtggcattctaatttttcaaacacaggtaaactagttgtagcttttagaaacagagttgatgatggaatataaatagaaactaccattatac 5635951  T
Q  201 ttttattaatgtaaacaatatgttattgttctgat 235  Q
    ||||| ||||||||||||||||| |||||||||||    
T  5635952 ttttaataatgtaaacaatatgtgattgttctgat 5635986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 51225380 - 51225578
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  51225380 atcaccaccatggatttgctccgattgaatctctctcgtattcgaattgtaaccagaaacacgaggaaataaagtgtcattctaatttttcaaacacatg 51225479  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
     |||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||||| |||||||||||    
T  51225480 taaactagttgtagcattc-ataacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgat 51225578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 35494798 - 35494604
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    |||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35494798 atcaccaccatggatttgctccgattgaatctctc--gtattcgaattgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 35494701  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttct 232  Q
     ||||||||||||||||||| ||| |||| |||||||||||||||||| |||||||||||||| |||||| ||||||||| | ||||| ||||||||    
T  35494700 taaactagttgtagcattcaggaacagagatgatgaggaaatataaattgaaactatcattatacttttaataatgtaaatagtatgtgattgttct 35494604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 32771711 - 32771512
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    |||| ||||||| |||||||| ||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||||| ||||||| |    
T  32771711 atcaacaccatgaatttgctctgattgaatctctctcatattcgaattgtaaccagaatcacgaggaagtaaagtgacattctaattttttaaacacatg 32771612  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
     || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||    
T  32771611 taatctagttgtagcattcaggaatagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgat 32771512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 36 - 217
Target Start/End: Complemental strand, 36316939 - 36316758
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| |||||||||||||||||||||||||||||||| |    
T  36316939 atcaccaccatggatttgctccgattgaatctctctcgtattcgaattgtaatctgaaacacgagaaagtaaagtggcattctaatttttcaaacacaag 36316840  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaaca 217  Q
     ||||||||||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||||    
T  36316839 taaactagttgtagcattcaggaacagagttgatgaggaaatataaatataaagtatcattatacttttaataatgtaaaca 36316758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 33446889 - 33446760
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33446889 atcaccaccatggatttgctccgattgaatctttctcgtattcgaattgtaaccagaaacacgaggaagtaaagtgacattctaatttttcaaacacagg 33446790  T
Q  136 caaactagttgtagcattcaagaatagagt 165  Q
     ||||||||||||||||||| ||| |||||    
T  33446789 taaactagttgtagcattcaggaacagagt 33446760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 49002118 - 49002224
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||||||||||||||    
T  49002118 atcaccaccatggatttgctccgattgaatctctctcgtattcgaattgtaactaaaaacacgaggaagtaaagtgacattctaatttttcaaacacagg 49002217  T
Q  136 caaacta 142  Q
     ||||||    
T  49002218 taaacta 49002224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 2182299 - 2182202
Alignment:
Q  138 aactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||| ||||| |||||||||||    
T  2182299 aactagttgtagcattcaggaacagagttgatgaggaaatataaattgaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 2182202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 10730789 - 10730879
Alignment:
Q  55 tccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacaggcaaactagtt 145  Q
    |||||||||||||||||||||||| |||  |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  10730789 tccgattgaatctctctcgtattcaaattttaaccaaaaacacgaggaagtaaagtggaattctaatttttcaaacacaggtaaactagtt 10730879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 2182384 - 2182297
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaac 88  Q
    |||||||||||||||||||||||| |||||   |||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  2182384 ctccaaaaccctttgttccaaaatcttgaagctttatcaccaccatggatttgctccgattaaatctctctcgtattcgaattgtaac 2182297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 30504061 - 30504291
Alignment:
Q  5 aaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaag 104  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  30504061 aaaaccctttgttccaaaattttgaagctttatcaccaccatggatttgctccgattgaatctctctcgtattcgaattgtaaccagaaacacaaggaag 30504160  T
Q  105 taaagtggcattctaatttttcaaacacaggcaaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattctttt 204  Q
    |||||||||||||||||||||||||||   | ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||    
T  30504161 taaagtggcattctaatttttcaaacaatagtaaactagttgtagcattcaggaacagagttgatgaggaaatataaatagaaactatcattatactttt 30504260  T
Q  205 attaatgtaaacaatatgttattgttctgat 235  Q
    | ||||||||||| ||||| |||||||||||    
T  30504261 aataatgtaaacagtatgtgattgttctgat 30504291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 42437630 - 42437430
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcatt-ctaatttttcaaacacag 134  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42437630 atcaccaccatggatttgcaccgattgaacctctctcgtattcgaattgtaaccagaaacacgaggaagtaaagtggcatttctaatttttcaaacacag 42437531  T
Q  135 gcaaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctga 234  Q
    | ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||||||||    
T  42437530 gtaaactagttgtagcattcaggaacatagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtcattgttctga 42437431  T
Q  235 t 235  Q
    |    
T  42437430 t 42437430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 24279225 - 24279026
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  24279225 atcaccaccatggatttgctccgattgaatccctctcgtattcgaattgtaaccagaaacacaaggaagtaaagtgacattctaatttttcaaacacagg 24279126  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
     |||||||||||| |||||| ||| |||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| ||||| |||||||||||    
T  24279125 taaactagttgtatcattcaggaacagagttgatgaggaaatataaatataaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 24279026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 26365726 - 26365492
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgag 100  Q
    |||||||||||||||||||||||| |||||   |||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  26365726 ctccaaaaccctttgttccaaaatcttgaagttttatcaccgccatggatttgctcccattgaatctctctcgtattcgaattgtaaccagaaacacgag 26365627  T
Q  101 gaagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattc 200  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |    
T  26365626 gaagtaaagtgacattctaatttttcaaacacaggtaaactagttgtagcattcaggaatatagttgatgaggaaatataaatagaaactatcattatac 26365527  T
Q  201 ttttattaatgtaaacaatatgttattgttctgat 235  Q
    ||||| ||||| ||||| ||||| |||||||||||    
T  26365526 ttttaataatgaaaacagtatgtgattgttctgat 26365492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 38163334 - 38163135
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38163334 atcaccaccatggatttgctccgattgaatctctctcgtattcgaattgtaaccagaaacacgaggaagtaaaatggcattctaatttttcaaacacagg 38163235  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
     ||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||||||    
T  38163234 taaactagttgtagcattcaggaacagagttgatgaggaaatataaatagaaactgtcattatacttttaataatgtaaacaatatgtgattgttctgat 38163135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 38973814 - 38974048
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgag 100  Q
    |||||||| ||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||    
T  38973814 ctccaaaatcctttgttccaaaatcttgaagctttatcaccaccatggatttgctccgattgaatctctctcgtattcgaattgtaaccagaaacataag 38973913  T
Q  101 gaagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattc 200  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| |||| |    
T  38973914 gaagtaaagtgacattctaatttttcaaacacatgtaaactagttgtagcattcaggaacaaagttgatgaggaaatataaatagaaactatccttatac 38974013  T
Q  201 ttttattaatgtaaacaatatgttattgttctgat 235  Q
    ||||| ||||||||||| ||||| |||||||||||    
T  38974014 ttttaataatgtaaacagtatgtgattgttctgat 38974048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 4887842 - 4888041
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  4887842 atcaccaccatggatttgctccgattgaatcactctcgtattcgaattgtaaccagaaacacgaggaagtgaagtgacattctaatttttcaaacacagg 4887941  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
     ||||||||||||||||||| |||  ||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||    
T  4887942 taaactagttgtagcattcaggaaccgagttgacgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 4888041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 4792685 - 4792919
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgag 100  Q
    |||||||| ||||||||||||||| |||||   ||||||||||| | ||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  4792685 ctccaaaatcctttgttccaaaatcttgaagttttatcaccaccgtagatttgctccgattgaatctctctcgtattcgaactgtaaccagaaacacgag 4792784  T
Q  101 gaagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattc 200  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |    
T  4792785 gaagtaaagtggcattctaatttttcaaacaaagataaactagttgtagcattcaggaacagagttgatgaggaaatataaatagaaactatcattatac 4792884  T
Q  201 ttttattaatgtaaacaatatgttattgttctgat 235  Q
    ||||| ||||||||||||||||| |||||||||||    
T  4792885 ttttaataatgtaaacaatatgtgattgttctgat 4792919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 29873501 - 29873700
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  29873501 atcaccaccatggatttgctccgattgaatctctctcgtattcgaattgtaaccagaaacacgaggaagtaaagtgacattctaattttttaaacacagg 29873600  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
     ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||    
T  29873601 taaactagttgtagcattcaggaacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 29873700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 22517137 - 22516903
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgag 100  Q
    |||||||||||||||||||||||| |||||   |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  22517137 ctccaaaaccctttgttccaaaatcttgaagttttatcaccaccatggatttgctccgattgaatctctctcgtatttgaattgtaaccaaaaacacgag 22517038  T
Q  101 gaagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattc 200  Q
    ||| ||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||  ||||| ||| ||||||||||||||||| ||||||||| |    
T  22517037 gaattaaagtgacattctaatttttcaaacacaggtaaacttgttgtagcattcaggaacggagttaatggggaaatataaatagaaaatatcattatac 22516938  T
Q  201 ttttattaatgtaaacaatatgttattgttctgat 235  Q
    ||||| ||||||||||||||||| |||||||||||    
T  22516937 ttttaataatgtaaacaatatgtgattgttctgat 22516903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 2018130 - 2017931
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  2018130 atcaccaccatggatttgctccaattgaatctctctcgtattcgaattgtaaccagaaacacgaggaagtaaagtgacattttaatttttcaaacacagg 2018031  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
     ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| ||||| |||||||||||    
T  2018030 taaactagttgtagcattcaggaacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtagacagtatgtgattgttctgat 2017931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 2173591 - 2173445
Alignment:
Q  3 ccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgagga 102  Q
    |||||||||||||||||||||| |||||       |||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||    
T  2173591 ccaaaaccctttgttccaaaatcttgaag------caccaccatggatttgcttcgattgaatctctctcgtatttgaattgtaaccagaaacacaagga 2173498  T
Q  103 agtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattca 155  Q
    ||||||||||||||||||||||||||||| ||| |||||| ||||||||||||    
T  2173497 agtaaagtggcattctaatttttcaaacagaggtaaactaattgtagcattca 2173445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 11364282 - 11364481
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11364282 atcaccaccatggatttgctccgattgaatctctctcgtattcgaattgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaatcacagg 11364381  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
     ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||    
T  11364382 taaactagttgtagcattcaggaacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 11364481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 44078187 - 44077953
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgag 100  Q
    |||||||||||||||||||||||| |||||   ||||||||||| |||||||||||| ||||||| |||||||||||||||| |||||||||||||||||    
T  44078187 ctccaaaaccctttgttccaaaatcttgaagttttatcaccaccgtggatttgctcccattgaatttctctcgtattcgaattgtaaccagaaacacgag 44078088  T
Q  101 gaagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattc 200  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| | |||||||||| ||||||||||||||||||||||||| |    
T  44078087 gaagtaaagtggcattataatttttcaaacacaggtaaactagttgtagcattcacgaacatagttgatgagaaaatataaatagaaactatcattatac 44077988  T
Q  201 ttttattaatgtaaacaatatgttattgttctgat 235  Q
    ||||  ||||||||||||||||| |||||||||||    
T  44077987 ttttgataatgtaaacaatatgtgattgttctgat 44077953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 23048689 - 23048921
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgag 100  Q
    |||||||||||||||||||||||| |||||   |||||||||||||| ||||||||||||||||||||||  |||||| ||| ||||| |||||||||||    
T  23048689 ctccaaaaccctttgttccaaaatcttgaagttttatcaccaccatgaatttgctccgattgaatctctcaggtattcaaattgtaac-agaaacacgag 23048787  T
Q  101 gaagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattc 200  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |    
T  23048788 gaagtaaagcggcattctaatttttcaaacacaggtaaactagttgtagcattcaggaacagagttgatgaggaaatataaatagaaactatcattatac 23048887  T
Q  201 ttttattaatgtaaacaatatgttattgttctga 234  Q
    ||||| ||||||||||| ||||| ||||||||||    
T  23048888 ttttaataatgtaaacagtatgtgattgttctga 23048921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 8667234 - 8667035
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    ||||| ||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8667234 atcactaccatggatttgctctgattgaatctctctcgtattctaattgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 8667135  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
     ||||||||||||||| |||  || ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||| ||||| |||||| ||||    
T  8667134 taaactagttgtagcaatcagtaacagagttgatgaggaaatataaattgaaactatcattatacttttaataatgtaaacagtatgtgattgttatgat 8667035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 38 - 235
Target Start/End: Original strand, 43890562 - 43890759
Alignment:
Q  38 caccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacaggca 137  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||||| |||||||| |||||||||||| ||||||||||||||||||||||| |    
T  43890562 caccaccatggatttgctttgattgaatctctctcgtattcgaattgtaacctgaaacacggggaagtaaagtgacattctaatttttcaaacacaggta 43890661  T
Q  138 aactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
    |||||||||||||||||| |||   |||||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||||| |||||||||||    
T  43890662 aactagttgtagcattcatgaacgaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgat 43890759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 21632199 - 21632428
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgag 100  Q
    |||||||||| || |||||||||| |||||     |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||    
T  21632199 ctccaaaaccattcgttccaaaatcttgaagctcaatcaccaccatggatttgctccgattgaatctctttcgtattcgaattgtaaccaaaaacacgag 21632298  T
Q  101 gaagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattc 200  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||| | ||||||||     ||||||||||||| ||||||||| |    
T  21632299 gaagtaaagtggcattctaatttttcaaactcaggtaaactagttgtagcattcaggaacaaagttgatg-----atataaatagaaaatatcattatac 21632393  T
Q  201 ttttattaatgtaaacaatatgttattgttctgat 235  Q
    ||||| ||||||||||| ||||| |||||| ||||    
T  21632394 ttttaataatgtaaacagtatgtgattgttttgat 21632428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 28732888 - 28732754
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgag 100  Q
    |||||||||||||||||||||||| |||||   |||      | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28732888 ctccaaaaccctttgttccaaaatcttgaagcttta------caatggatttgctccgattgaatctctctcgtattcgaattgtaaccagaaacacgag 28732795  T
Q  101 gaagtaaagtggcattctaatttttcaaacacaggcaaacta 142  Q
    |||||||||||| ||||| |||||||||||||| | ||||||    
T  28732794 gaagtaaagtggtattct-atttttcaaacacatgtaaacta 28732754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 28720880 - 28720811
Alignment:
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattctttta 205  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||| ||||||    
T  28720880 caaactagttgtagcattcaggaatagagttgatgagtaaatataaatagaaattatcattatactttta 28720811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 34055877 - 34055832
Alignment:
Q  38 caccaccatggatttgctccgattgaatctctctcgtattcgaatc 83  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||    
T  34055877 caccaccatggatttgctccgatcaaatctctctcgtgttcgaatc 34055832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 50877528 - 50877294
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgag 100  Q
    |||||||| | ||||||| ||||| |||||   ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  50877528 ctccaaaatcttttgttctaaaatcttgaagctttatcaccaccatagatttgctccgattgaatctctctcgtattcgaattgtaaccagaaacacgag 50877429  T
Q  101 gaagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattc 200  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |    
T  50877428 gaagtaaagtgacattctaatttttcaaacacaggtaaactagttgtagcattcagaaatagagttgatgaggaaatataaatagaaactatcattatac 50877329  T
Q  201 ttttattaatgtaaacaatatgttattgttctgat 235  Q
    ||||| | ||||||||| ||||| |||||||||||    
T  50877328 ttttaatgatgtaaacagtatgtgattgttctgat 50877294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 4475862 - 4475660
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  4475862 atcactaccatggatttgctccgattgaatctctctcgtattcgaattctaaccagaaacacgaagaagtaaagtgacattctaatttttcaaacacagg 4475763  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
     ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||    
T  4475762 taaactagttgtagcattcaggaacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgat 4475663  T
Q  236 att 238  Q
    |||    
T  4475662 att 4475660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 49695816 - 49696015
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49695816 atcaccaccatggatttgctccgattaaatctctctcgtattcgaattgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 49695915  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
     ||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||||| ||||| |||||||||||    
T  49695916 taaactagttgtagcattcaggaacagagttgatgagaaaatataaatagaaactgtcattatacttttaataatgtaaacagtatgtgattgttctgat 49696015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 21259660 - 21259462
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| |    
T  21259660 atcaccaccatggatttgctccgattgaatctctctcgtattcgaattgtaaccataaacacgaggaagtaaagtggcattctaatttt-caaacacatg 21259562  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
     ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| ||||| |||||||||||    
T  21259561 taaactagttgtagcattcatgaatagagttgatgaggaaatataaaaagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 21259462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 44 - 235
Target Start/End: Original strand, 51548817 - 51549008
Alignment:
Q  44 catggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacaggcaaactag 143  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  51548817 catggatttgctccgattgaatctctctcgtattcgaattgtaactagaaacacgaggaggtaaagtggcattctaatttttcaaacacaggtaaactag 51548916  T
Q  144 ttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
    |||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||  |||||||||||    
T  51548917 ttgtagcattcaggaacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgcgattgttctgat 51549008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 65 - 235
Target Start/End: Original strand, 50503891 - 50504061
Alignment:
Q  65 tctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattcaagaatagag 164  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||    
T  50503891 tctctctcgtattcgaattgtaaccagaaacacgaggaagtaaaatggcattctaatttttcaaacacaggtaaactagttgtagcattcaggaacagag 50503990  T
Q  165 ttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
    |||||||| ||||||||||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||    
T  50503991 ttgatgagaaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 50504061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 36 - 205
Target Start/End: Original strand, 39277418 - 39277587
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    ||||||| |||||||||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  39277418 atcaccaacatggatttgctacgattgaatctctctcctattcgaattgtaaccataaacacgaggaagtaaagtgacattctaatttttcaaacacagg 39277517  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattctttta 205  Q
     ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  39277518 taaactagttgtagcattcaggaacagagttgatgaggaaatataaatagaaactatcattactctttta 39277587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 7057326 - 7057474
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgag 100  Q
    |||||||||| ||||||||||||| |||||       |||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  7057326 ctccaaaaccatttgttccaaaatcttgaag------caccgccatggatttgctccgattgaatctctctcgtattcgaattgtaaccaaaaacacgag 7057419  T
Q  101 gaagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattca 155  Q
    || ||||||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  7057420 gaggtaaagtggtattctaatttttcaaacacaggtaaactaattgtagcattca 7057474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 50503830 - 50503866
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctc 72  Q
    |||||||||||||||||||||||||||||||||||||    
T  50503830 atcaccaccatggatttgctccgattgaatctctctc 50503866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 39277370 - 39277399
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaa 30  Q
    ||||||||||||||||||||||||||||||    
T  39277370 ctccaaaaccctttgttccaaaattttgaa 39277399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 49695768 - 49695797
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaa 30  Q
    ||||||||||||||||||||||||||||||    
T  49695768 ctccaaaaccctttgttccaaaattttgaa 49695797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 45309278 - 45309079
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45309278 atcaccaccatggatttgctccgattgaatctctctcgtattcgaattgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacggg 45309179  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
     ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||    
T  45309178 taaactagttgtagcattcaggaacatagttgatgaggaaatataaatagaaactatcattatgcttttaataatgtaaacagtatgtgattgttctgat 45309079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 8951775 - 8951977
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8951775 atcaccaccatggatttgctccgattgaatctctctcgtattcgaattgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 8951874  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatc---attattcttttattaatgtaaacaatatgttattgttct 232  Q
     ||| ||||||||||||||| ||| | |||||||||||||||||||||||||||||||   ||||| |||||| ||||||||||| ||||| ||||||||    
T  8951875 taaattagttgtagcattcaggaacatagttgatgaggaaatataaatagaaactatcataattatacttttaataatgtaaacagtatgtgattgttct 8951974  T
Q  233 gat 235  Q
    |||    
T  8951975 gat 8951977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 12279949 - 12279750
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12279949 atcaccaccacggatttgctccgattgaatctctctcgtatttgaattgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 12279850  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
     ||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||||| |||||| ||||||||| | ||||| |||||||||||    
T  12279849 taaactagttgtagcattcaggaacaaagttgatgaggaaatgtaaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgat 12279750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 42074947 - 42074716
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgag 100  Q
    |||||||||||||||||||||||| || ||   ||||||||||||||||||||||| |||||||||||||  |||||||||| || ||||||||||||||    
T  42074947 ctccaaaaccctttgttccaaaatcttaaagctttatcaccaccatggatttgctctgattgaatctctc--gtattcgaattgtgaccagaaacacgag 42074850  T
Q  101 gaagtaaagtggcattctaatttttc--aaacacaggcaaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattat 198  Q
    |||||||||||||||||| |||||||  ||||||||| ||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||    
T  42074849 gaagtaaagtggcattctgatttttcaaaaacacaggtaaactagttgtagcattcatgaa---agttgatgaggaaatataaatagaaactatcattat 42074753  T
Q  199 tcttttattaatgtaaacaatatgttattgttctgat 235  Q
     |||||| ||||||||||| |||   |||||||||||    
T  42074752 acttttaataatgtaaacagtatacgattgttctgat 42074716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 59 - 235
Target Start/End: Complemental strand, 8348688 - 8348512
Alignment:
Q  59 attgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattcaaga 158  Q
    ||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| ||    
T  8348688 attgattctctcacgtattcgaattgtaaccagatacacgaggaagtaaagtggcattctaatttttcaaacatatgtaaactagttgtagcattcagga 8348589  T
Q  159 atagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
    | ||| |||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||||| |||||||||||    
T  8348588 acagaattgatgaggaaatataaatagaaactatcattatacttttaattatgtaaacagtatgtgattgttctgat 8348512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 38 - 235
Target Start/End: Original strand, 38828948 - 38829147
Alignment:
Q  38 caccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacaggca 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  38828948 caccaccatggatttgctccgattgaatctctctcgtattcgaattgtaaccagaaacacgaggaagtaaagtggcattttaatttttcaaacacaggta 38829047  T
Q  138 aactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaaca--atatgttattgttctgat 235  Q
    |||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| |||||||||||  |||||| |||||||||||    
T  38829048 aactagttgtagcattcaggaacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatatgtgattgttctgat 38829147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 6033572 - 6033338
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgag 100  Q
    |||||||| ||||||||||||||  |||||   ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  6033572 ctccaaaatcctttgttccaaaaacttgaagctttatcaccaccatggatttgctccgattgaatctctctcgtattcgaattgtaaccagaaacaggag 6033473  T
Q  101 gaagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattc 200  Q
    ||||||||||| |||| |||| ||||||||||| | ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |    
T  6033472 gaagtaaagtgacattttaatgtttcaaacacatgtaaactagttgtagcattcatgaacaaagttgatgaggaaatataaatagaaactatcattatac 6033373  T
Q  201 ttttattaatgtaaacaatatgttattgttctgat 235  Q
    ||||| ||||||||| | ||||| |||||||||||    
T  6033372 ttttaataatgtaaatagtatgtgattgttctgat 6033338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 51543335 - 51543563
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgag 100  Q
    |||||||||||||||||||||||| ||||     |||||| |||||||||||||||||||||||||||  |||||||||||| ||||||| |||||||||    
T  51543335 ctccaaaaccctttgttccaaaatcttgaggctctatcac-accatggatttgctccgattgaatctc--tcgtattcgaattgtaaccaaaaacacgag 51543431  T
Q  101 gaagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattc 200  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  51543432 gaagtaaaggggcattctaatttttcaaacaaaggtaaactagttgtagcattcaagaacagagttgatgaggaaatataaatagaaactatcattatac 51543531  T
Q  201 ttttattaatgtaaacaatatgttattgttct 232  Q
    ||||| ||||||||||| ||||| ||||||||    
T  51543532 ttttaataatgtaaacagtatgtgattgttct 51543563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 33167726 - 33167527
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33167726 atcaccaccatggatttgctctgattaaatctctctcgtattcgaattgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 33167627  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
     ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| ||||| |||||| ||||||||| | ||||| |||||||||||    
T  33167626 taaactagttgtagcattcaggaacacagttgatgaggaaatataaatagaaactattattatacttttaataatgtaaatagtatgtgattgttctgat 33167527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 29775712 - 29775946
Alignment:
Q  1 ctccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgag 100  Q
    ||||||||| |||||||||||||| |||||   ||||||||||| | |||||| || ||||||||||||||||| || |||| || ||||||||||||||    
T  29775712 ctccaaaacactttgttccaaaatcttgaagctttatcaccaccgtagatttgttctgattgaatctctctcgtttttgaattgttaccagaaacacgag 29775811  T
Q  101 gaagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattc 200  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |    
T  29775812 gaagtaaagtggcattctaatttttcaaacacgggtaaactagttgtagcattcaggaatagagttgatgaggaaatataaatataaactatcattatac 29775911  T
Q  201 ttttattaatgtaaacaatatgttattgttctgat 235  Q
    ||||| ||||| ||||| ||||| |||||||||||    
T  29775912 ttttaataatgcaaacagtatgtgattgttctgat 29775946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 8144038 - 8143839
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  8144038 atcaccaccatggatttgctccaattgaatctctctcgtattcaaattgtaaccagaaacacgaggaagtaaagtggcattctaattttccaaaaacagg 8143939  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
     |||||| |||||||||||| ||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||    
T  8143938 taaactacttgtagcattcaggaacagagttgatcaggaaatataaatagaaactatcattatacttttaataatgtaaacattatgtgattgttctgat 8143839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 53060810 - 53061007
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    ||||||||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||||||||||||||| |||| |||||||||||||||  |    
T  53060810 atcaccaccatggatttgctccgatcgaatcactctcgtattcaaattgtaaccagaaacacgaggaagtaaagtgacattgtaatttttcaaacac--g 53060907  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
     ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||    
T  53060908 taaactagttgtagcattcaggaatacagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 53061007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 1139539 - 1139722
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  1139539 atcaccaccatggatttgcttcgattgaatctctctcgtatttgaattgtaaccagaaacatgaggaagtaaagtggcattctaatttttcaaacacggg 1139638  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
     ||||||||||||||||||                |||||||||||||||||||||||||||| |||||| ||||||||||| ||||| |||| ||||||    
T  1139639 taaactagttgtagcattc----------------aggaaatataaatagaaactatcattatacttttaataatgtaaacattatgtgattggtctgat 1139722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 44271593 - 44271547
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaat 82  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||    
T  44271593 atcaccgccatggatttgctccgattgaatctctctcgtgttcgaat 44271547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 2977 - 2798
Alignment:
Q  36 atcaccaccatggatttgctccgattgaatctctctcgtattcgaatcgtaaccagaaacacgaggaagtaaagtggcattctaatttttcaaacacagg 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||                
T  2977 atcaccaccatggatttgctccgattgaatctctctcgtattcgaattgtaactagaaagacgaggaagtaaagtgacattctaattt------------ 2890  T
Q  136 caaactagttgtagcattcaagaatagagttgatgaggaaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgat 235  Q
            ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||    
T  2889 --------ttgcagcattcaggaacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgat 2798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 20449 - 20596
Alignment:
Q  3 ccaaaaccctttgttccaaaattttgaataattatcaccaccatggatttgc-tccgattgaatctctctcgtattcgaatcgtaaccagaaacacgagg 101  Q
    |||||||||||||||||||||| |||||       |||||||||||||| || |||  |||||||||||||||||| |||| |||||||||||||| |||    
T  20449 ccaaaaccctttgttccaaaatcttgaag------caccaccatggattcgcgtccacttgaatctctctcgtatttgaattgtaaccagaaacacaagg 20542  T
Q  102 aagtaaagtggcattctaatttttcaaacacaggcaaactagttgtagcattca 155  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||||||||||    
T  20543 aagtaaagtggcattctaatttttcaaacagaggtaaactaattgtagcattca 20596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 200967 - 200903
Alignment:
Q  174 aaatataaatagaaactatcattattcttttattaatgtaaacaatatgttattgttctgatatt 238  Q
    ||||| ||||||||||||||| ||| |||||| ||||||||| | ||||| ||||||||||||||    
T  200967 aaatagaaatagaaactatcactatacttttaataatgtaaatagtatgtgattgttctgatatt 200903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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