View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3229_high_125 (Length: 249)
Name: NF3229_high_125
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_125 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 27362679 - 27362906
Alignment:
| Q |
19 |
ggtccatggtaagaaaaaattattaaattgaccaaagttagacaaaattgctattttatgaaggattaagttaattaactcttgccattttaatatata- |
117 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27362679 |
ggtccatggtatgaaaaaattattaaattgaccaaagttagacaaaattgctattttatgaaggattaagttaattaactcttgccattttaatatatat |
27362778 |
T |
|
| Q |
118 |
aataaaatagaggatcttcggctgacttttattattctaattatatttttaaataaatttttctgtaataatgttacattgctgatgttaacnnnnnnng |
217 |
Q |
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||||||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||||| ||||||||||| |||| |||||||||| |
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| T |
27362779 |
aataaaatagaggattttcggctgacttttattactccaattatatttttaaacaaatttttctttaataatgttatattgttgatgttaacaaaaaat- |
27362877 |
T |
|
| Q |
218 |
ataagaatggatattatatttgatatatt |
246 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
27362878 |
ataagaatggatattatatttgatatatt |
27362906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 47118793 - 47118744
Alignment:
| Q |
144 |
ttttattattctaattatatttttaaataaatttttctgtaataatgtta |
193 |
Q |
| |
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|||||||||| |||||| ||| ||||||||||||||| ||||||||||| |
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|
| T |
47118793 |
ttttattattttaattacattcataaataaatttttctataataatgtta |
47118744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 7806701 - 7806757
Alignment:
| Q |
151 |
attctaattatatttttaaataaatttttctgtaataatgttacattgctgatgtta |
207 |
Q |
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|||||| ||||||||||||||||||||| ||||| ||||||| |||| || ||||| |
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|
| T |
7806701 |
attctagttatatttttaaataaattttgttgtaacaatgttatattgttggtgtta |
7806757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 35791917 - 35791977
Alignment:
| Q |
145 |
tttattattctaattatatttttaaataaatttttctgtaataatgttacattgctgatgt |
205 |
Q |
| |
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||||||||| |||||||| |||||| ||||||| || ||||||||||| |||| |||||| |
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| T |
35791917 |
tttattattttaattatacctttaaacaaattttcctataataatgttatattgttgatgt |
35791977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 32820167 - 32820094
Alignment:
| Q |
110 |
aatatataaataaaatagaggatcttcggctgac--ttttattattctaattatatttttaaataaatttttct |
181 |
Q |
| |
|
|||||||||| ||||||||| || || |||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
32820167 |
aatatataaagaaaatagagtattttgggctgatatttttattattctaattatacttttaaataaatttttct |
32820094 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 32640011 - 32639956
Alignment:
| Q |
148 |
attattctaattatatttttaaataaatttttctgtaataatgttacattgctgat |
203 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||| ||||||||||| |||| |||| |
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|
| T |
32640011 |
attattcaaattacatctttaaataaatttttctataataatgttatattgttgat |
32639956 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 14978237 - 14978273
Alignment:
| Q |
144 |
ttttattattctaattatatttttaaataaatttttc |
180 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
14978237 |
ttttattattctaattatatttttaaataaatttttc |
14978273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 40780775 - 40780838
Alignment:
| Q |
144 |
ttttattattctaattatatttttaaataaatttttctgtaataatgttacattgctgatgtta |
207 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||||| ||||||| ||| |||| || ||||| |
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|
| T |
40780775 |
ttttattattccaattacatctttaaataaatttttctataataatattatattgttggtgtta |
40780838 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 10385157 - 10385199
Alignment:
| Q |
156 |
aattatatttttaaataaatttttctgtaataatgttacattg |
198 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| |||| |
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|
| T |
10385157 |
aattatattttcaaataaatttttctataataatgttatattg |
10385199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 25788945 - 25789006
Alignment:
| Q |
146 |
ttattattctaattatatttttaaataaatttttctgtaataatgttacattgctgatgtta |
207 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||||||||||| |||| || ||||| |
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|
| T |
25788945 |
ttattattctaattataccctttaataattttttctgtaataatgttatattgttggtgtta |
25789006 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 16568234 - 16568297
Alignment:
| Q |
144 |
ttttattattctaattatatttttaaataaatttttctgtaataatgttacattgctgatgtta |
207 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||| || |||||||| |||| |||||||| |
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|
| T |
16568234 |
ttttattattttaattatacctttaaataaatttttctatactaatgttatattgttgatgtta |
16568297 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 39178221 - 39178165
Alignment:
| Q |
151 |
attctaattatatttttaaataaatttttctgtaataatgttacattgctgatgtta |
207 |
Q |
| |
|
|||||||||||| ||||||||||||| || ||||||||||| |||| |||||||| |
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|
| T |
39178221 |
attctaattatacccttaaataaattttcctataataatgttatattgttgatgtta |
39178165 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 39585018 - 39585082
Alignment:
| Q |
144 |
ttttattattctaattatatttttaaataa-atttttctgtaataatgttacattgctgatgtta |
207 |
Q |
| |
|
|||| |||||||||||||||||||||| || ||||||| ||||||||||| |||| || ||||| |
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|
| T |
39585018 |
ttttgttattctaattatatttttaaacaatctttttctataataatgttatattgatggtgtta |
39585082 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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