View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_high_127 (Length: 249)

Name: NF3229_high_127
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_high_127
NF3229_high_127
[»] chr1 (4 HSPs)
chr1 (1-80)||(44526024-44526103)
chr1 (160-235)||(44526133-44526208)
chr1 (82-128)||(1721133-1721179)
chr1 (92-128)||(5862131-5862167)
[»] chr8 (1 HSPs)
chr8 (83-129)||(18546073-18546119)
[»] chr7 (2 HSPs)
chr7 (82-128)||(16814690-16814736)
chr7 (92-128)||(43209404-43209440)
[»] chr4 (1 HSPs)
chr4 (82-128)||(12585615-12585661)
[»] chr3 (2 HSPs)
chr3 (94-128)||(19137624-19137658)
chr3 (92-128)||(12143463-12143499)
[»] chr6 (2 HSPs)
chr6 (83-128)||(9031760-9031805)
chr6 (80-128)||(17176140-17176188)


Alignment Details
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 44526024 - 44526103
Alignment:
Q  1 gattaattgaaccatatcctgaatattttattattggtcagaaatattatgtctaaaagactagaaagaaactgtgattt 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44526024 gattaattgaaccatatcctgaagattttattattggtcagaaatattatgtctaaaagactagaaagaaactgtgattt 44526103  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 44526133 - 44526208
Alignment:
Q  160 tacaatttcattttttgataaaagcaaaataaaataatattggctcataaaacccatcacgttgaagcacgttgtg 235  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44526133 tacaatttcattttctggtaaaagcaaaataaaataatattggctcataaaacccatcacgttgaagcacgttgtg 44526208  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 1721133 - 1721179
Alignment:
Q  82 tgtccctgtaaacatagctcagttggcaggaagatgcattgttatat 128  Q
    ||||||||| | |||||||||||||| ||||| ||||||||||||||    
T  1721133 tgtccctgtgagcatagctcagttggtaggaacatgcattgttatat 1721179  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 5862131 - 5862167
Alignment:
Q  92 aacatagctcagttggcaggaagatgcattgttatat 128  Q
    |||||||||||||||||||| | ||||||||||||||    
T  5862131 aacatagctcagttggcagggacatgcattgttatat 5862167  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 18546073 - 18546119
Alignment:
Q  83 gtccctgtaaacatagctcagttggcaggaagatgcattgttatata 129  Q
    ||||| |||||||||||||||||| |||||| || ||||||||||||    
T  18546073 gtccccgtaaacatagctcagttgacaggaatatacattgttatata 18546119  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 16814690 - 16814736
Alignment:
Q  82 tgtccctgtaaacatagctcagttggcaggaagatgcattgttatat 128  Q
    ||||||||| |||||||||||||||||| ||| ||||||| ||||||    
T  16814690 tgtccctgtgaacatagctcagttggcaagaacatgcattattatat 16814736  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 43209404 - 43209440
Alignment:
Q  92 aacatagctcagttggcaggaagatgcattgttatat 128  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  43209404 aacataactcagttggcaggaacatgcattgttatat 43209440  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 12585661 - 12585615
Alignment:
Q  82 tgtccctgtaaacatagctcagttggcaggaagatgcattgttatat 128  Q
    |||||| ||||||||| ||||||||||||| | ||||||||||||||    
T  12585661 tgtccccgtaaacataactcagttggcagggacatgcattgttatat 12585615  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 128
Target Start/End: Original strand, 19137624 - 19137658
Alignment:
Q  94 catagctcagttggcaggaagatgcattgttatat 128  Q
    |||||||||||||||||||| ||||||||||||||    
T  19137624 catagctcagttggcaggaacatgcattgttatat 19137658  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 12143499 - 12143463
Alignment:
Q  92 aacatagctcagttggcaggaagatgcattgttatat 128  Q
    |||||||||||||||||||| | ||||||||||||||    
T  12143499 aacatagctcagttggcagggacatgcattgttatat 12143463  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 9031760 - 9031805
Alignment:
Q  83 gtccctgtaaacatagctcagttggcaggaagatgcattgttatat 128  Q
    ||||| || |||||||||||||||||||| | ||||||||||||||    
T  9031760 gtccccgtgaacatagctcagttggcagggacatgcattgttatat 9031805  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 17176140 - 17176188
Alignment:
Q  80 tctgtccctgtaaacatagctcagttggcaggaagatgcattgttatat 128  Q
    |||||||  |||||||||||||||||| |||| | ||||||||||||||    
T  17176140 tctgtcctcgtaaacatagctcagttgacagggacatgcattgttatat 17176188  T

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